Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nvy-e-12-0-UI.s1.3

Sequence:


               
               GAGAGCAGGGCAAGCACTGCCACCTCCCCCATGTCCACTCGGCACAGTGCCGCTTGACGT
CAGCACCCTGACACACCGTTAAGGTTGGGTCGTTGTTTCAGACTGACATGTACCTCCCTG
TTCTCAGTTCCTAAGCGCTCCTCTCCCTACTTCAAAGGGTATTTTTCTTTAAGAATTTGT
GATGCTTTTTTCAAGATCCGGGTCGTGAGTGTTTTGGTAACAAGGGAACACTATCTCTGT
AGTTTAGAGGTAAAGGTCACCTGTAACTCCGCCATCTGGGAAAAGCTACTGTTACTTAGG
CATATAGACTTCCAGATTCGTCTGTGCTTTTCTAGATTTTTTTACATGGGATCAAGTTGT
ACATACTGTTTTGTAATTTTCACTTGACAGCACCATGACTCTCCCCTCATGTCAGATGTG
TTTATATCTTTTTTAATGGCTGCATGATACTTCATCACATGTGCCTCATTTTGTTAAACT
ACTGTTTTTAGGTTGTTTCCAATTTTTCACTAATAAACTGCTTTAAAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGCAGGGCAAGCACTGCCACCTCCCCCATGTCCACTCGGCACAGTGCCGCTTGACGT
CAGCACCCTGACACACCGTTAAGGTTGGGTCGTTGTTTCAGACTGACATGTACCTCCCTG
TTCTCAGTTCCTAAGCGCTCCTCTCCCTACTTCAAAGGGTATTTTTCTTTAAGAATTTGT
GATGCTTTTTTCAAGATCCGGGTCGTGAGTGTTTTGGTAACAAGGGAACACTATCTCTGT
AGTTTAGAGGTAAAGGTCACCTGTAACTCCGCCATCTGGGAAAAGCTACTGTTACTTAGG
CATATAGACTTCCAGATTCGTCTGTGCTTTTCTAGATTTTTTTACATGGGATCAAGTTGT
ACATACTGTTTTGTAATTTTCACTTGACAGCACCATGACTCTCCCCTCATGTCAGATGTG
TTTATATCTTTTTTAATGGCTGCATGATACTTCATCACATGTGCCTCATTTTGTTAAACT
ACTGTTTTTAGGTTGTTTCCAATTTTTCACTAATAAACTGCTTTAAAGAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               92-528, gnl|bosTau2|chr3 (42661482-42661920)
               

               
               92-528, gnl|Hg17|chr1 (86925445-86925884)
               

               
               92-528, gnl|Mm7|chr3 (144580400-144579974)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-528, gnl|bosTau2|chr3 (42661482-42661920)
               

               
               92-528, gnl|Hg17|chr1 (86925445-86925884)
               

               
               92-528, gnl|Mm7|chr3 (144580400-144579974)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               aor (0.195274)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	92-528, gnl\|bosTau2\|chr3 (42661482-42661920)
	92-528, gnl\|Hg17\|chr1 (86925445-86925884)
	92-528, gnl\|Mm7\|chr3 (144580400-144579974)

	aor (0.195274)
	gul (0.177588)
	sin (0.174948)
	mga (0.160205)
	lyg (0.133103)
	eru (0.120048)
	ecc (0.115035)