Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nwa-c-06-0-UI.s1.3

Sequence:


               
               TGCGAGAAACTCAAAGTCATCTTAAAAAAAAAAAAAAAAATACAAAAAAAAATTTACAAA
AAAACAAACACAAAAAAATATCTTTTTTAGGCCAGAGTTTTCTACAGGTATTAATGAATA
TTTTTCTTAATCCTTATAAGTTTTATGTGTTTAATATTTCTTAATACCGGTAGCATTAAT
TTATACTTTTGTAGCAACACAATATTTTTATAAACAGCCAGTGCTTGGCTCAAGTCTCCA
CAAGGGGTTTATACAGGGTTATCTTGCGACCCTGTGAACCATGTACTGTATTTAAAAAAA
AAAAAAAAAAAAAAAAAAGTTACCAGTGTCACCCTTGCTGTGTTAATTAACAAAAACATT
GTTCTCGGTCTCCGGTGTCGTTGGTGTGGATCCAACAGTTCTCTAAGGAGTCAACATTGC
ATGGGGGTTGAGTTGACGGTTCTCGTGATGTAAACCCCCGAGACCCACCTGGAGGGTTTA
TTTAGGGCTTTCTGTTTGTCCTTTGCGTTTCCGGTGTCGTTTGGTTTGGGTACCGTTTCT
CCATTTACAGCCAAATGAGTTTTGTGATGTCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGAGAAACTCAAAGTCATCTTAAAAAAAAAAAAAAAAATACAAAAAAAAATTTACAAA
AAAACAAACACAAAAAAATATCTTTTTTAGGCCAGAGTTTTCTACAGGTATTAATGAATA
TTTTTCTTAATCCTTATAAGTTTTATGTGTTTAATATTTCTTAATACCGGTAGCATTAAT
TTATACTTTTGTAGCAACACAATATTTTTATAAACAGCCAGTGCTTGGCTCAAGTCTCCA
CAAGGGGTTTATACAGGGTTATCTTGCGACCCTGTGAACCATGTACTGTATTTAAAAAAA
AAAAAAAAAAAAAAAAAAGTTACCAGTGTCACCCTTGCTGTGTTAATTAACAAAAACATT
GTTCTCGGTCTCCGGTGTCGTTGGTGTGGATCCAACAGTTCTCTAAGGAGTCAACATTGC
ATGGGGGTTGAGTTGACGGTTCTCGTGATGTAAACCCCCGAGACCCACCTGGAGGGTTTA
TTTAGGGCTTTCTGTTTGTCCTTTGCGTTTCCGGTGTCGTTTGGTTTGGGTACCGTTTCT
CCATTTACAGCCAAATGAGTTTTGTGATGTCGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-312, - strand, RNAz p=0.831828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-312, - strand, RNAz p=0.831828

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr8 (58220611-58221174)
               

               
               1-576, gnl|Hg17|chr9 (113897521-113898079)
               

               
               1-576, gnl|Mm7|chr4 (62572473-62573045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr8 (58220611-58221174)
               

               
               1-576, gnl|Hg17|chr9 (113897521-113898079)
               

               
               1-576, gnl|Mm7|chr4 (62572473-62573045)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-576, gnl\|bosTau2\|chr8 (58220611-58221174)
	1-576, gnl\|Hg17\|chr9 (113897521-113898079)
	1-576, gnl\|Mm7\|chr4 (62572473-62573045)