Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nwa-e-08-0-UI.s1.3

Sequence:


               
               TTTTGTTGACGCTCTAGCTTAAGAAACTTAAAAAAAAAAAAAGACTGTTTGGGGATTTTA
TTTTTCCTTATATACTGATTCTACAAAATAGAAACTACTTCATTTTAATTGTATATTATT
CAAGCACCTTTGTTGAAGCTCAAAAAAAAATTATGCCTCTTTAAACTTTAGCAATTATAG
GAATATTTATGTAACTATCTTATGCTTCAGAAAAACAAAAGTATTTGTGTGCGTGTGTAT
ATAATATATATATATACATATATATTTATACACATACAATTTATGTTTTCCTGTTGAATG
TATTTTTATGAGATTTTAACCAGAACAAAAACAAACAGGCATTCCATATCAATGCTTTGG
ATCACTTACAAATTTTTGATTAACACAAAAAAATCTCATTCTACCTGCAGTTTAGTTGGA
AAGAGATGTGAGTATGTGTGTGTGTGTTTGTATGTGTGTGTGCACATGCCCTGAGCAGTC
AGCATCACACCTGCTATGGAGAAGGTATTCCTTTACTAAAAATCTTCCTCATTTGGATTT
GCTTCGTTTTTCAATTTGCTTACTGGCCAGAGACATTGACGGCAGTTTATCTGTATCACT
AATCAGCTCCTGGATTTTATTTTTTTCAAACAACTGTTTGAAACAACTACTGGAATATTG
TCCATAATAAGCTGGAAGTTTGTTGTAGTTTGCCTCAGATATAACTGACTGTATACTATA
GTGTTAACTTTTCAAACAGCTCTTAGCACTTTTATACTAATTACCCATTTGTTGCATTGA
TTTTTCTTTTAAAAATGCTTGTTGTGAAAGACACAGATACCCAGTATGCTTAATGTGAAA
AGAAAATGTGTTCTGTTTTGTAAAGGAACTTTCAAGTATTGTTGTAAATACTTGGACAGA
GGTTGCTGAACTTTAAAAAAAAATTAATTTATTATTATAATGACCTAATTTATTAATCTG
AAGATTAACCATTTCTTTTGTCTTAGAATATCAAAAAAAGGAAAAGAAAAAGGTGTTCTA
GCTGTTTGCGTCAAAGAAAAAAGATTTATTATCAAGGGGCAATATTTTTATCTATTTCCA
AAATAAATTTGTTAATGATATGTTACCAAAATAGATTTACATCAGCCTGATTAATATAAA
ATTTTTGTTGACAATCCATTCCTGGCATAAAAAGTATCCAAAAAATTGTAAATGCTTGCT
TTTTGTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTGACGCTCTAGCTTAAGAAACTTAAAAAAAAAAAAAGACTGTTTGGGGATTTTA
TTTTTCCTTATATACTGATTCTACAAAATAGAAACTACTTCATTTTAATTGTATATTATT
CAAGCACCTTTGTTGAAGCTCAAAAAAAAATTATGCCTCTTTAAACTTTAGCAATTATAG
GAATATTTATGTAACTATCTTATGCTTCAGAAAAACAAAAGTATTTGTGTGCGTGTGTAT
ATAATATATATATATACATATATATTTATACACATACAATTTATGTTTTCCTGTTGAATG
TATTTTTATGAGATTTTAACCAGAACAAAAACAAACAGGCATTCCATATCAATGCTTTGG
ATCACTTACAAATTTTTGATTAACACAAAAAAATCTCATTCTACCTGCAGTTTAGTTGGA
AAGAGATGTGAGTATGTGTGTGTGTGTTTGTATGTGTGTGTGCACATGCCCTGAGCAGTC
AGCATCACACCTGCTATGGAGAAGGTATTCCTTTACTAAAAATCTTCCTCATTTGGATTT
GCTTCGTTTTTCAATTTGCTTACTGGCCAGAGACATTGACGGCAGTTTATCTGTATCACT
AATCAGCTCCTGGATTTTATTTTTTTCAAACAACTGTTTGAAACAACTACTGGAATATTG
TCCATAATAAGCTGGAAGTTTGTTGTAGTTTGCCTCAGATATAACTGACTGTATACTATA
GTGTTAACTTTTCAAACAGCTCTTAGCACTTTTATACTAATTACCCATTTGTTGCATTGA
TTTTTCTTTTAAAAATGCTTGTTGTGAAAGACACAGATACCCAGTATGCTTAATGTGAAA
AGAAAATGTGTTCTGTTTTGTAAAGGAACTTTCAAGTATTGTTGTAAATACTTGGACAGA
GGTTGCTGAACTTTAAAAAAAAATTAATTTATTATTATAATGACCTAATTTATTAATCTG
AAGATTAACCATTTCTTTTGTCTTAGAATATCAAAAAAAGGAAAAGAAAAAGGTGTTCTA
GCTGTTTGCGTCAAAGAAAAAAGATTTATTATCAAGGGGCAATATTTTTATCTATTTCCA
AAATAAATTTGTTAATGATATGTTACCAAAATAGATTTACATCAGCCTGATTAATATAAA
ATTTTTGTTGACAATCCATTCCTGGCATAAAAAGTATCCAAAAAATTGTAAATGCTTGCT
TTTTGTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               599-751, - strand, RNAz p=0.946702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               599-751, - strand, RNAz p=0.946702

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1212, gnl|bosTau2|chr11 (15037834-15039053)
               

               
               1-1212, gnl|Hg17|chr2 (36688391-36689635)
               

               
               1-1212, gnl|Mm7|chr17 (76671195-76672486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr11 (15037834-15039053)
               

               
               1-1212, gnl|Hg17|chr2 (36688391-36689635)
               

               
               1-1212, gnl|Mm7|chr17 (76671195-76672486)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ute (0.398353)
               

               
               vin (0.332557)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.398353)
               

               
               vin (0.332557)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eje (0.0988338)

	1-1212, gnl\|bosTau2\|chr11 (15037834-15039053)
	1-1212, gnl\|Hg17\|chr2 (36688391-36689635)
	1-1212, gnl\|Mm7\|chr17 (76671195-76672486)

	ute (0.398353)
	vin (0.332557)
	mgm (0.180343)
	mga (0.160205)
	liv (0.146284)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	eje (0.0988338)