Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nwc-g-02-0-UI.s1.3

Sequence:


               
               TACTTTAATGCTTTAAACTCCATGTCTCCTTGAGAGCAGAAAGTGACATTTTGAAGTTAA
TGTCCCAGTCTTTGTTTTTACTTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TAACCCACTGCTCGAGGCCAGGGATCAAACCTGCATCCTCATGGATACTGGTCAGATTAG
TTTCTGCTGAGCCACGATGGGAACTCCAGTCTTTGTTTTTAGACAGCATTGTTTCTTATT
GTTAGCTGAGGGCAGGGCTCTGAGTGTGTATGTATCGCTGAGGTCTCTGGGTTTAGGTCT
CCTGGTTCTCAGAGCCATGCCAGCCCGTGTAAGCAGCTTTAGTCTGCGTGTCCCTTTTGG
GAAGGCATCTTAAGCACTGATGAATGTTGGTGTTTTGCTATACCAGAAAGCAGCTCCATG
TTGAACTATTTTTTTAAACTCTGTAGGTTCATTGTACTTACAACCTCAGCTGGCATCATG
GACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTTGGATTCTTTTTCTAG
GGATGTAATACATATGTGCAAATAAAATGGCTCAGTGGACTTTGGTGCTTCCGTCAGTCA
TGTTTTGAGCTTTTTTACAGCAAAGTGGAAAGAGCGTCTGAGGGAGTGTACAGCCTCTGT
TAAGTGGTGACTGCTGTTTCCCCGAAGTACAAGAAAATTTTGACTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTAATGCTTTAAACTCCATGTCTCCTTGAGAGCAGAAAGTGACATTTTGAAGTTAA
TGTCCCAGTCTTTGTTTTTACTTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TAACCCACTGCTCGAGGCCAGGGATCAAACCTGCATCCTCATGGATACTGGTCAGATTAG
TTTCTGCTGAGCCACGATGGGAACTCCAGTCTTTGTTTTTAGACAGCATTGTTTCTTATT
GTTAGCTGAGGGCAGGGCTCTGAGTGTGTATGTATCGCTGAGGTCTCTGGGTTTAGGTCT
CCTGGTTCTCAGAGCCATGCCAGCCCGTGTAAGCAGCTTTAGTCTGCGTGTCCCTTTTGG
GAAGGCATCTTAAGCACTGATGAATGTTGGTGTTTTGCTATACCAGAAAGCAGCTCCATG
TTGAACTATTTTTTTAAACTCTGTAGGTTCATTGTACTTACAACCTCAGCTGGCATCATG
GACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTTGGATTCTTTTTCTAG
GGATGTAATACATATGTGCAAATAAAATGGCTCAGTGGACTTTGGTGCTTCCGTCAGTCA
TGTTTTGAGCTTTTTTACAGCAAAGTGGAAAGAGCGTCTGAGGGAGTGTACAGCCTCTGT
TAAGTGGTGACTGCTGTTTCCCCGAAGTACAAGAAAATTTTGACTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               472-589, + strand, RNAz p=0.705042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-589, + strand, RNAz p=0.705042

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001019, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001019, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               393-666, gnl|bosTau2|chr25 (11809011-11809280)
               

               
               393-666, gnl|Hg17|chr16 (18701943-18701685)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               393-666, gnl|bosTau2|chr25 (11809011-11809280)
               

               
               393-666, gnl|Hg17|chr16 (18701943-18701685)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	393-666, gnl\|bosTau2\|chr25 (11809011-11809280)
	393-666, gnl\|Hg17\|chr16 (18701943-18701685)