Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nwo-d-11-0-UI.s1.3

Sequence:


               
               ATCAGTAGCAGTTTAGCTATAATGGGCGTTTCTCCTCCCATGAGCTCCGTTGTTGTGGAA
AAACATCATCCGGTCACAGTGCAAACCATTCCTCAAGCTACTGCAGCAAAATATCCCCGG
ACCATCCACCCTGAAAGTAGTACCTCGGTTTCCAGGTCTCTAGGAACCAGATCAACTCAC
ACGCAATCTCTCACAAGCATTCATTCCATAAAAGTGGTTGACTAAAAAGAATGTTCATAT
TGAGGTCTTTTAATTCTTCTGGTTTTAACCAAGAATTACAAGTCTTTAGTTTTTAAAATT
TCGTATTCTTAGAACACCATGGATGCGTCATGTTCATTTTTTCAAAATGACAAGAGACTT
TTTCAAGCTGTACTATCCTTTGTAACTGTATGTAGGGTTATTTTAATTTTATTTTTTATT
TAAGCAACTAAGTAAAACTTTCTTAAATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGTAGCAGTTTAGCTATAATGGGCGTTTCTCCTCCCATGAGCTCCGTTGTTGTGGAA
AAACATCATCCGGTCACAGTGCAAACCATTCCTCAAGCTACTGCAGCAAAATATCCCCGG
ACCATCCACCCTGAAAGTAGTACCTCGGTTTCCAGGTCTCTAGGAACCAGATCAACTCAC
ACGCAATCTCTCACAAGCATTCATTCCATAAAAGTGGTTGACTAAAAAGAATGTTCATAT
TGAGGTCTTTTAATTCTTCTGGTTTTAACCAAGAATTACAAGTCTTTAGTTTTTAAAATT
TCGTATTCTTAGAACACCATGGATGCGTCATGTTCATTTTTTCAAAATGACAAGAGACTT
TTTCAAGCTGTACTATCCTTTGTAACTGTATGTAGGGTTATTTTAATTTTATTTTTTATT
TAAGCAACTAAGTAAAACTTTCTTAAATTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-352, + strand, RNAz p=0.999064

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-352, + strand, RNAz p=0.999064

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152408, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152408, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               81-455, gnl|bosTau2|chr10 (1524278-1524652)
               

               
               81-455, gnl|Hg17|chr5 (75006160-75005783)
               

               
               81-455, gnl|Mm7|chr13 (93483835-93484203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-455, gnl|bosTau2|chr10 (1524278-1524652)
               

               
               81-455, gnl|Hg17|chr5 (75006160-75005783)
               

               
               81-455, gnl|Mm7|chr13 (93483835-93484203)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mga (0.160205)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               ese (0.126502)

	81-455, gnl\|bosTau2\|chr10 (1524278-1524652)
	81-455, gnl\|Hg17\|chr5 (75006160-75005783)
	81-455, gnl\|Mm7\|chr13 (93483835-93484203)