Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nwv-f-08-0-UI.s1.3

Sequence:


               
               GCCGTAACGGGGAAAAAAGGAAGGGGAAAAAAAGGCTTCTCTCCACGTACCAGTCTAATT
TAGTTTGTGAAAAGCTTGACAGACCTTGAGTTAGTTCTCCATCTCGCTAAGGTTTAAAGA
CGGCAGACCCAACTGGTTAAAGTCTTTCCTGCCACAGACCGTGACGGCCTGCTCCAGACA
CGCAGGCGGAACCCGGCCTCTGCTCACCCCAGTCGTCACCCCGCTTGAATGATTCTGCCT
TTCGCGACCACCTGCCAGGTTGGGCGGCTTGAGGGCACTGACAGGGACCTGTTGGTTGGC
TGGCCCGCAGTCACAGTGTAGTCTGTGGATTCCTGCGTGTCACCCCGTCAGCGCGCAGGA
GATCAGGAGACGCCAGGGTTTATGCAGGAGGGCGATTACCTACACCTCATACCTCTGCTC
TCATTCGTTGTTTCCAGATGCTATAGGAACATTTCTGTGCTGAATCCTATTAGATTAAAA
AGGGGTTAAAACCCAAATGCTGTATATTAATTTGTAATTATGTATAAAGTAAAGCAGTTT
TAAACTGTAAAGATTTTTTTTCAGTGTGTTTTCTGAAATTTTGCCACAACATACCGGCTT
TGTATTTTATTTATCATCTTTTCTAGTTATTGGCTTCAGACTCTTGTAAAGTCTCCCTCC
ACCCTTTCAAAAAATAAATGTCCTTTAAGTCTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGTAACGGGGAAAAAAGGAAGGGGAAAAAAAGGCTTCTCTCCACGTACCAGTCTAATT
TAGTTTGTGAAAAGCTTGACAGACCTTGAGTTAGTTCTCCATCTCGCTAAGGTTTAAAGA
CGGCAGACCCAACTGGTTAAAGTCTTTCCTGCCACAGACCGTGACGGCCTGCTCCAGACA
CGCAGGCGGAACCCGGCCTCTGCTCACCCCAGTCGTCACCCCGCTTGAATGATTCTGCCT
TTCGCGACCACCTGCCAGGTTGGGCGGCTTGAGGGCACTGACAGGGACCTGTTGGTTGGC
TGGCCCGCAGTCACAGTGTAGTCTGTGGATTCCTGCGTGTCACCCCGTCAGCGCGCAGGA
GATCAGGAGACGCCAGGGTTTATGCAGGAGGGCGATTACCTACACCTCATACCTCTGCTC
TCATTCGTTGTTTCCAGATGCTATAGGAACATTTCTGTGCTGAATCCTATTAGATTAAAA
AGGGGTTAAAACCCAAATGCTGTATATTAATTTGTAATTATGTATAAAGTAAAGCAGTTT
TAAACTGTAAAGATTTTTTTTCAGTGTGTTTTCTGAAATTTTGCCACAACATACCGGCTT
TGTATTTTATTTATCATCTTTTCTAGTTATTGGCTTCAGACTCTTGTAAAGTCTCCCTCC
ACCCTTTCAAAAAATAAATGTCCTTTAAGTCTCAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-210, gnl|bosTau2|chr21 (9841164-9841373)
               

               
               1-210, gnl|Hg17|chr15 (84092871-84093110)
               

               
               1-210, gnl|Mm7|chr7 (71605987-71606182)
               


               
               305-679, gnl|bosTau2|chr21 (9841412-9841780)
               

               
               305-679, gnl|Hg17|chr15 (84093201-84093567)
               

               
               305-679, gnl|Mm7|chr7 (71606217-71606576)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-210, gnl|bosTau2|chr21 (9841164-9841373)
               

               
               1-210, gnl|Hg17|chr15 (84092871-84093110)
               

               
               1-210, gnl|Mm7|chr7 (71605987-71606182)
               


               
               305-679, gnl|bosTau2|chr21 (9841412-9841780)
               

               
               305-679, gnl|Hg17|chr15 (84093201-84093567)
               

               
               305-679, gnl|Mm7|chr7 (71606217-71606576)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               hea (0.408998)
               

               
               hlv (0.278513)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               hlv (0.278513)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1-210, gnl\|bosTau2\|chr21 (9841164-9841373)
	1-210, gnl\|Hg17\|chr15 (84092871-84093110)
	1-210, gnl\|Mm7\|chr7 (71605987-71606182)

	305-679, gnl\|bosTau2\|chr21 (9841412-9841780)
	305-679, gnl\|Hg17\|chr15 (84093201-84093567)
	305-679, gnl\|Mm7\|chr7 (71606217-71606576)

	hea (0.408998)
	hlv (0.278513)
	sto (0.179824)
	rec (0.17307)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	spl (0.143184)
	cst (0.140036)
	thg (0.126791)
	tra (0.123092)
	pgl (0.118483)