Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nza-a-15-0-UI.s1.3

Sequence:


               
               CCAGACTCCGACAATCAAGGGTGAGAGGGTGCAGCAGGTCCCTTGGTTCCCAGTCCAGCC
AGAATCACCAATATGGGTTCCCAGGCCTCAGAGTTGTATGGCAGGGCCCCTGGTAGGACT
GGACATCACTACAGTCCAGTATAAAGCTACCCCGGGAGCCCAGGTATCCCCCCCACCCCA
ACCAGACCTGGTGCCTTGATGCCCCCACCCCAGCTGGGACGGTATAGAGAAGGAAGGGTC
TTGGTTTCCTCTCCTACTCACTTCCTTAGGCTCCTGAATTCATTTGCTTTTGAATCTTAT
TATTTTTCTGGGTTGTTTTGTTTTGTTTTGTTTTTTTGGTTTTGGTTTTCCTTGCCTTCC
TTTTTCTCTGTCTCCACCACTTTCCCTATGTCTTTCTCATCGTCTCTTGTGTTTCTCTTC
TCTCACCCTCAATTTCTCTGTCCATTCCGGGCCTCCTCCCCCTTCTCCCATTCCCCTGGT
CCCTCCTTGGTCTCCTTTTCGATATGCCAAACCAATTTTGGGTCGAGTGCATTTAACGAG
AACAAAACAAAAGGCTCATTAACAACAAGATCGTTTCAGAAAAAAAAAAGTTTTAAAAAA
TTGTTGAGTCAAAAAAAAATCAATAAAGAAATTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGACTCCGACAATCAAGGGTGAGAGGGTGCAGCAGGTCCCTTGGTTCCCAGTCCAGCC
AGAATCACCAATATGGGTTCCCAGGCCTCAGAGTTGTATGGCAGGGCCCCTGGTAGGACT
GGACATCACTACAGTCCAGTATAAAGCTACCCCGGGAGCCCAGGTATCCCCCCCACCCCA
ACCAGACCTGGTGCCTTGATGCCCCCACCCCAGCTGGGACGGTATAGAGAAGGAAGGGTC
TTGGTTTCCTCTCCTACTCACTTCCTTAGGCTCCTGAATTCATTTGCTTTTGAATCTTAT
TATTTTTCTGGGTTGTTTTGTTTTGTTTTGTTTTTTTGGTTTTGGTTTTCCTTGCCTTCC
TTTTTCTCTGTCTCCACCACTTTCCCTATGTCTTTCTCATCGTCTCTTGTGTTTCTCTTC
TCTCACCCTCAATTTCTCTGTCCATTCCGGGCCTCCTCCCCCTTCTCCCATTCCCCTGGT
CCCTCCTTGGTCTCCTTTTCGATATGCCAAACCAATTTTGGGTCGAGTGCATTTAACGAG
AACAAAACAAAAGGCTCATTAACAACAAGATCGTTTCAGAAAAAAAAAAGTTTTAAAAAA
TTGTTGAGTCAAAAAAAAATCAATAAAGAAATTAAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr7 (7652992-7653643)
               

               
               1-636, gnl|Hg17|chr19 (14120182-14119566)
               

               
               1-636, gnl|Mm7|chr8 (82519939-82520538)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr7 (7652992-7653643)
               

               
               1-636, gnl|Hg17|chr19 (14120182-14119566)
               

               
               1-636, gnl|Mm7|chr8 (82519939-82520538)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)

	1-636, gnl\|bosTau2\|chr7 (7652992-7653643)
	1-636, gnl\|Hg17\|chr19 (14120182-14119566)
	1-636, gnl\|Mm7\|chr8 (82519939-82520538)

	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	gul (0.177588)
	fbs (0.175346)
	hyp (0.142837)