Ss1.1-mCP1-MI-P-CP1-nza-a-18-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGTCCAGCTCTGCTGCTCTCCCGACGCAGCGAGGGTGGGCCAAGCAGAGTTGATCAG CCCCTGCCTGCTCTGCTGAAGGCTGCGGACAGGAGGGGGTGGGGGTACCCTGGGGTCTGC GGGGGGCGGGTGGGGGTTGGTTGAAGATCCAGGTGAGGAGGGGCCTCGCTGGGGCACCCG GGCTGACCTGGGGCGGAGCGGCCTCGCGCCGTCCCTGCCCTGTGCAGTATTTATTGCTAA ATTATTGTCCAGGAGGGGCGGCACTGGGCCGGGCCCTGGGTATTTATTGCTGTACATAGT GTATGTTTGTGATATATAAGGTTTTCTTTATTTTGTATATGATCAATAAACACCTTTTAA ACAGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGTCCAGCTCTGCTGCTCTCCCGACGCAGCGAGGGTGGGCCAAGCAGAGTTGATCAG CCCCTGCCTGCTCTGCTGAAGGCTGCGGACAGGAGGGGGTGGGGGTACCCTGGGGTCTGC GGGGGGCGGGTGGGGGTTGGTTGAAGATCCAGGTGAGGAGGGGCCTCGCTGGGGCACCCG GGCTGACCTGGGGCGGAGCGGCCTCGCGCCGTCCCTGCCCTGTGCAGTATTTATTGCTAA ATTATTGTCCAGGAGGGGCGGCACTGGGCCGGGCCCTGGGTATTTATTGCTGTACATAGT GTATGTTTGTGATATATAAGGTTTTCTTTATTTTGTATATGATCAATAAACACCTTTTAA ACAGAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-150, + strand, RNAz p=0.862184 | |
| 193-340, - strand, RNAz p=0.993345 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-150, + strand, RNAz p=0.862184 | |
| 193-340, - strand, RNAz p=0.993345 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 288-372, + strand, RNAmicro p=0.999992 | |
| 272-415, - strand, RNAmicro p=0.992143 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 288-372, + strand, RNAmicro p=0.999992 | |
| 272-415, - strand, RNAmicro p=0.992143 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002359, + |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-365, gnl|bosTau2|chr19 (45437632-45437265) | |
| 1-365, gnl|Hg17|chr17 (77469857-77469438) | |
| 1-365, gnl|Mm7|chr11 (120734607-120734162) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-365, gnl|bosTau2|chr19 (45437632-45437265) | |
| 1-365, gnl|Hg17|chr17 (77469857-77469438) | |
| 1-365, gnl|Mm7|chr11 (120734607-120734162) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| eru (0.120048) |