Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nza-a-23-0-UI.s1.3

Sequence:


               
               AACTCATGATACTGAAAATCAGCCACAGCCTCAATGAACTTAAGAAAGAACTTCATAGTA
CAGCAGCTCAGCTGGCAGCAGATCTGTTAAAATACCATGCTGATCATGTGGTTCTAAAAG
CATTAAAACTTACTGGAGTAGAAGGAAATTTAGAAGGTTTGGCCGAATATGCCTGCAAAC
TCTCTGAACAGAAAGAGCGGCTTGTTGAGACCTGTCGATTGTTGAGACATGTGTCTGGGA
CAGAACCTCTTGAAATAACCTGTATACATGCAGAAGAGACATTTCAGGTGACTGGCCAAC
AGATAATTTCTGCTGCTGAAACTTTGACGTTGCATCCATCTAGTAAAATTGCCAAAGAAA
ATCTAGATGTATTTTGTGAAGCCTGGGAATCCCAAATTAGTGACCTGTCAACACTGCTGA
GAGAAATCAATGATGTGTTTGAAGGAAGACGAGGAGAGAAGTATGGCTACCTTTCACTTC
CAAAGCCAATGAAGAATAATGCAAACCTTAAATCAGTAAAGCCAGACAAGCCTGACTCTG
AGGAGCAAGCCAGGGTAGCAAAGGTTGGACTCAAGGTGGGCTTGCTCACCTCTGATGCCA
ACTGTGAGATTGAGAAGTGGGAGGATCAGGAGAATGAGATTGTTCGATATGGACGGAACA
TGTCCAGCATGGCCTATTCTCTGTATTTATTTACCAGGGGAGAGGGGCCACTGAAAACTT
CCCAGGATTTGATTCATCAGCTAGAGGTTTTTGCTGAGGAGGGTTTGAAGCTTGCTTCAA
GTGTGCAAGCGTTCTCCAAACAGCTGAAAGATGACGATAAGCTTATGCTTCTTGTGGAAA
TAAACAAGCTTGTTCCTCTATGCCACCAGCTCCAGACAATAACCAAGACATCTCTGCAGA
ATCAAGTGTTTCTAAAGGTTGATAAGTGTATTACAAAGACAAGATCCATGATGGCTATAT
TGGTCCAGCTTCTCTCACTTTGCTATAAACTGCTGAAGAAGCTTCAGATGGAAAACAACA
GATGAGTCTCAGTTACAGATAGATTCTGTGGATGATAAAACCTGAGAAGATTTTGAGGTC
AGATCTCTGGAACACCACGTGGCAAAGCTGACATTTTTAGAAAGCCAATGACCCTTTATA
TTTCAGAAATTCAACAACTTCTTAAAGAAAACAAACAAATCATGCTTTATTTTCTGATTA
CGTTTTCTGAAACTGATTGTGATGCTTTCTGACAACTAATAAATGCCGTGGTAGTTGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCATGATACTGAAAATCAGCCACAGCCTCAATGAACTTAAGAAAGAACTTCATAGTA
CAGCAGCTCAGCTGGCAGCAGATCTGTTAAAATACCATGCTGATCATGTGGTTCTAAAAG
CATTAAAACTTACTGGAGTAGAAGGAAATTTAGAAGGTTTGGCCGAATATGCCTGCAAAC
TCTCTGAACAGAAAGAGCGGCTTGTTGAGACCTGTCGATTGTTGAGACATGTGTCTGGGA
CAGAACCTCTTGAAATAACCTGTATACATGCAGAAGAGACATTTCAGGTGACTGGCCAAC
AGATAATTTCTGCTGCTGAAACTTTGACGTTGCATCCATCTAGTAAAATTGCCAAAGAAA
ATCTAGATGTATTTTGTGAAGCCTGGGAATCCCAAATTAGTGACCTGTCAACACTGCTGA
GAGAAATCAATGATGTGTTTGAAGGAAGACGAGGAGAGAAGTATGGCTACCTTTCACTTC
CAAAGCCAATGAAGAATAATGCAAACCTTAAATCAGTAAAGCCAGACAAGCCTGACTCTG
AGGAGCAAGCCAGGGTAGCAAAGGTTGGACTCAAGGTGGGCTTGCTCACCTCTGATGCCA
ACTGTGAGATTGAGAAGTGGGAGGATCAGGAGAATGAGATTGTTCGATATGGACGGAACA
TGTCCAGCATGGCCTATTCTCTGTATTTATTTACCAGGGGAGAGGGGCCACTGAAAACTT
CCCAGGATTTGATTCATCAGCTAGAGGTTTTTGCTGAGGAGGGTTTGAAGCTTGCTTCAA
GTGTGCAAGCGTTCTCCAAACAGCTGAAAGATGACGATAAGCTTATGCTTCTTGTGGAAA
TAAACAAGCTTGTTCCTCTATGCCACCAGCTCCAGACAATAACCAAGACATCTCTGCAGA
ATCAAGTGTTTCTAAAGGTTGATAAGTGTATTACAAAGACAAGATCCATGATGGCTATAT
TGGTCCAGCTTCTCTCACTTTGCTATAAACTGCTGAAGAAGCTTCAGATGGAAAACAACA
GATGAGTCTCAGTTACAGATAGATTCTGTGGATGATAAAACCTGAGAAGATTTTGAGGTC
AGATCTCTGGAACACCACGTGGCAAAGCTGACATTTTTAGAAAGCCAATGACCCTTTATA
TTTCAGAAATTCAACAACTTCTTAAAGAAAACAAACAAATCATGCTTTATTTTCTGATTA
CGTTTTCTGAAACTGATTGTGATGCTTTCTGACAACTAATAAATGCCGTGGTAGTTGCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876154|ref|XP_593825.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876154|ref|XP_593825.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               208-689, gnl|bosTau2|chr23 (1631502-1631989)
               

               
               208-689, gnl|Hg17|chr9 (108812331-108794052)
               

               
               208-689, gnl|Mm7|chr4 (56868735-56858382)
               


               
               885-1259, gnl|bosTau2|chr23 (1632584-1632953)
               

               
               885-1259, gnl|Hg17|chr9 (108784890-108784413)
               

               
               885-1259, gnl|Mm7|chr4 (56853994-56853556)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-689, gnl|bosTau2|chr23 (1631502-1631989)
               

               
               208-689, gnl|Hg17|chr9 (108812331-108794052)
               

               
               208-689, gnl|Mm7|chr4 (56868735-56858382)
               


               
               885-1259, gnl|bosTau2|chr23 (1632584-1632953)
               

               
               885-1259, gnl|Hg17|chr9 (108784890-108784413)
               

               
               885-1259, gnl|Mm7|chr4 (56853994-56853556)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               lyg (0.931718)
               

               
               aor (0.781097)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               med (0.116252)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.931718)
               

               
               aor (0.781097)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               med (0.116252)

	208-689, gnl\|bosTau2\|chr23 (1631502-1631989)
	208-689, gnl\|Hg17\|chr9 (108812331-108794052)
	208-689, gnl\|Mm7\|chr4 (56868735-56858382)

	885-1259, gnl\|bosTau2\|chr23 (1632584-1632953)
	885-1259, gnl\|Hg17\|chr9 (108784890-108784413)
	885-1259, gnl\|Mm7\|chr4 (56853994-56853556)

	lyg (0.931718)
	aor (0.781097)
	sag (0.36543)
	gul (0.355177)
	rec (0.346141)
	fat (0.294855)
	liv (0.292569)
	spl (0.286369)
	csk (0.281492)
	fce (0.271592)
	ova (0.258264)
	pan (0.23596)
	mas (0.210305)
	tes (0.207814)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	thg (0.126791)
	med (0.116252)