Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nza-e-02-0-UI.s1.3

Sequence:


               
               CACATCAGACTGGTCCTCTGAGGGGCAGCTTCAGCTCCCTCCCCCCTC------------
GCAGCCCCGGGGATGTTNTGCTCATAATCCCCCCATTTCTGCTTCCCTGAATGTGCTCTG
AGCATCCCTGAACCAGGATCTGCCCATCCCTACCCTGTCCTGTGTGGTGTCCCTTCCCTG
CTTGACCCAATGTCTGCAGAATGAAGTCACCTTAGCCCCCTCTGCTGGAACTCTCAGGCC
TCGCTGGCTGGGTCCTGCTCAGCCTGGGCTAGTGACAATCTGCAAGGCTGAGTGACAGCC
CCTGGGGTTGAGGTCCCTGTGGCTCCTGGTCAGGCTACCCACTGGGAAGGGAGCACTGTT
AAATCAGGGGTGCTCACCACCCCTAGAGTTTGGAGGAAGAAGGTATATTTTGGGATGGAG
GATCAATGCTTTTTTTGTTTATTTTGTTATTTTTTGATAGGTGGGTGGGACAGTCTCTTT
AAAATGGGGCAGGCCACACCCCCATTCCGTGCCTCAGTTTCCCCATCTGTAAACTGTAGA
TATGACTACTGACCTACCTCGCAGGGGGCTGTGGGGAGGCATAAGCTGATGTTTGTAAAG
CGCTTTGTAAATAAACGTGCTCTCTGAATGCCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCAGACTGGTCCTCTGAGGGGCAGCTTCAGCTCCCTCCCCCCTC------------
GCAGCCCCGGGGATGTTNTGCTCATAATCCCCCCATTTCTGCTTCCCTGAATGTGCTCTG
AGCATCCCTGAACCAGGATCTGCCCATCCCTACCCTGTCCTGTGTGGTGTCCCTTCCCTG
CTTGACCCAATGTCTGCAGAATGAAGTCACCTTAGCCCCCTCTGCTGGAACTCTCAGGCC
TCGCTGGCTGGGTCCTGCTCAGCCTGGGCTAGTGACAATCTGCAAGGCTGAGTGACAGCC
CCTGGGGTTGAGGTCCCTGTGGCTCCTGGTCAGGCTACCCACTGGGAAGGGAGCACTGTT
AAATCAGGGGTGCTCACCACCCCTAGAGTTTGGAGGAAGAAGGTATATTTTGGGATGGAG
GATCAATGCTTTTTTTGTTTATTTTGTTATTTTTTGATAGGTGGGTGGGACAGTCTCTTT
AAAATGGGGCAGGCCACACCCCCATTCCGTGCCTCAGTTTCCCCATCTGTAAACTGTAGA
TATGACTACTGACCTACCTCGCAGGGGGCTGTGGGGAGGCATAAGCTGATGTTTGTAAAG
CGCTTTGTAAATAAACGTGCTCTCTGAATGCCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-448, + strand, RNAz p=0.973909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-448, + strand, RNAz p=0.973909

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of U73727, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of U73727, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-621, gnl|bosTau2|chr2 (77006679-77006054)
               

               
               1-621, gnl|Hg17|chr1 (29473315-29473928)
               

               
               1-621, gnl|Mm7|chr4 (130983464-130982876)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr2 (77006679-77006054)
               

               
               1-621, gnl|Hg17|chr1 (29473315-29473928)
               

               
               1-621, gnl|Mm7|chr4 (130983464-130982876)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               amn (0.417711)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	1-621, gnl\|bosTau2\|chr2 (77006679-77006054)
	1-621, gnl\|Hg17\|chr1 (29473315-29473928)
	1-621, gnl\|Mm7\|chr4 (130983464-130982876)