Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nza-l-21-0-UI.s1.3

Sequence:


               
               CTGGCTCCCTCGCTGTGTACCAGAGCTGCCATCTCTTGTGGAATCCAGGGACGCATTGCT
TCACCCATGGCGCCTCTGACCATCACCTCCTGCTTTCTAATGAGGCAGAGCCTCTATTTT
TATTCTCGTTTCTTAAAAGGGGGAGCATAGGGTGTTCTAGATTCCAGCTTTAAACCCCAG
CCATCCAGTAAAACTGGGCTTGGGTTAGGATTCATCGCCTGTGTGGCCTTTGCCTAATCT
CACCCACCACCCACAGGCCCTGTGACTTCCAGGCCTGCCTCTGGAGCCCCTGCCACCCGG
GATGAGGACAAGTTTACAGTGGCCAGAAGGGACGTGGCCATATGATAGGCTTGCGTGGCC
CGATGTAGCAGGAGCGCCTGGACACCTGCCACTCCAGAAGTGCACTGTGCCTACAGGTGT
GAGGATGGCCGGAAGGCTCCCAAGAAGCCCAGAAATGCTCCCCAGCTCCTCCAGCAGGGC
TTCTACTTCAGGTTCTAAGAGAGCACTTTTTCCTCAAGGTCCCATTTTATAACCACTAGT
TTGCAGGTTGTCTTAGCGCCCTGCTGATGGGCTACACGCAGTGTTTCCCAGCTCTGGACT
TGCACGCAGCTCCAGTCAAGTCCCCTTGAAGGCAGGGCAGCAGGAAATCTTTCTGAAATG
CCAGAGTGTGAGTCAGCCCGAGCCCAGACAGGGGCGACCAGAGTCCGCCTCGGCAGAGGG
AAGGCAGCAGGGCCCCTGGCCTGAGTCCAAGGTCACCAGCGGGTCCAGCCCTGCTCAGAC
GGCGTCTCCTGGCCTTTGCCCCCAGGAGCCACCTTCCAGCTGCTCTTGACCAGCAATGAC
AGACTATCTTTTCAAAAGAGCAGAATTTTTCAGGAGGGCAGAAAATGGAGAGAGTTTAAA
GAAAAAATGTAAAGATGGTAACAACTGACCTACAAAGGGGAATGGGCCATTTTATGCGCA
ATAAAAGTTTTTACAAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTCCCTCGCTGTGTACCAGAGCTGCCATCTCTTGTGGAATCCAGGGACGCATTGCT
TCACCCATGGCGCCTCTGACCATCACCTCCTGCTTTCTAATGAGGCAGAGCCTCTATTTT
TATTCTCGTTTCTTAAAAGGGGGAGCATAGGGTGTTCTAGATTCCAGCTTTAAACCCCAG
CCATCCAGTAAAACTGGGCTTGGGTTAGGATTCATCGCCTGTGTGGCCTTTGCCTAATCT
CACCCACCACCCACAGGCCCTGTGACTTCCAGGCCTGCCTCTGGAGCCCCTGCCACCCGG
GATGAGGACAAGTTTACAGTGGCCAGAAGGGACGTGGCCATATGATAGGCTTGCGTGGCC
CGATGTAGCAGGAGCGCCTGGACACCTGCCACTCCAGAAGTGCACTGTGCCTACAGGTGT
GAGGATGGCCGGAAGGCTCCCAAGAAGCCCAGAAATGCTCCCCAGCTCCTCCAGCAGGGC
TTCTACTTCAGGTTCTAAGAGAGCACTTTTTCCTCAAGGTCCCATTTTATAACCACTAGT
TTGCAGGTTGTCTTAGCGCCCTGCTGATGGGCTACACGCAGTGTTTCCCAGCTCTGGACT
TGCACGCAGCTCCAGTCAAGTCCCCTTGAAGGCAGGGCAGCAGGAAATCTTTCTGAAATG
CCAGAGTGTGAGTCAGCCCGAGCCCAGACAGGGGCGACCAGAGTCCGCCTCGGCAGAGGG
AAGGCAGCAGGGCCCCTGGCCTGAGTCCAAGGTCACCAGCGGGTCCAGCCCTGCTCAGAC
GGCGTCTCCTGGCCTTTGCCCCCAGGAGCCACCTTCCAGCTGCTCTTGACCAGCAATGAC
AGACTATCTTTTCAAAAGAGCAGAATTTTTCAGGAGGGCAGAAAATGGAGAGAGTTTAAA
GAAAAAATGTAAAGATGGTAACAACTGACCTACAAAGGGGAATGGGCCATTTTATGCGCA
ATAAAAGTTTTTACAAGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               78-250, + strand, RNAz p=0.829238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-250, + strand, RNAz p=0.829238

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               78-338, gnl|bosTau2|chr5 (67776814-67777075)
               

               
               78-338, gnl|Hg17|chr22 (16646020-16645697)
               

               
               78-338, gnl|Mm7|chr6 (120958154-120957866)
               


               
               362-695, gnl|bosTau2|chr5 (67777053-67777379)
               

               
               362-695, gnl|Hg17|chr22 (16645755-16645184)
               

               
               362-695, gnl|Mm7|chr6 (120957887-120957420)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-338, gnl|bosTau2|chr5 (67776814-67777075)
               

               
               78-338, gnl|Hg17|chr22 (16646020-16645697)
               

               
               78-338, gnl|Mm7|chr6 (120958154-120957866)
               


               
               362-695, gnl|bosTau2|chr5 (67777053-67777379)
               

               
               362-695, gnl|Hg17|chr22 (16645755-16645184)
               

               
               362-695, gnl|Mm7|chr6 (120957887-120957420)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cst (0.140036)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cst (0.140036)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	78-338, gnl\|bosTau2\|chr5 (67776814-67777075)
	78-338, gnl\|Hg17\|chr22 (16646020-16645697)
	78-338, gnl\|Mm7\|chr6 (120958154-120957866)

	362-695, gnl\|bosTau2\|chr5 (67777053-67777379)
	362-695, gnl\|Hg17\|chr22 (16645755-16645184)
	362-695, gnl\|Mm7\|chr6 (120957887-120957420)

	cbe (0.239234)
	cmu (0.186393)
	sto (0.179824)
	cst (0.140036)
	ecc (0.115035)
	ldo (0.0970026)