Ss1.1-mCP1-MI-P-CP1-nzb-b-21-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGCTGTGGCCGCAGGTCTCGGAGCGGGTCGGAGTCGCCGCGGGCGCGTAGCACACTG CAACCCCTACCCAAGCCCCGGTCTCCCCACCAGTGTCCCCGCTGCTGCCTCGCCTCGGCC AGGCCCCAAAGGCAAGGACAAAGAGGCTGTCCGGAGGCTCAGCCGGAGCCAGATTTTACC TGTAGAGGAGCCTGCCGGGAACCACAGGCTACAAGATGGTTTGCGGGGGCTTCGCTTGTT CCAAGAACTGCCTGTGTGCGCTGAACCTACTCTACACGTTGGTTAGTTTGTTGCTAATTG GAATTGCTGCCTGGGGCATTGGCTTTGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGG TCATCGCAGTGGGAATCTTCTTGTTCCTGATCGCATTAGTGGGGCTGATCGGAGCCGTAA AACACCATCAAGTGTTGCTTTTCTTTTACATGATTATTCTCTTACTTGTATTTATTTTTC AGTTTTCTGTATCATGTGCTTGTTTAGCCCTGAATCAGGGGCAACAGAGTCAGCTTCTGG AAGTTGGTTGGAACAACACAGCAAGTGCTCGAAATGACATCCAGAGAAATTTAAACTGCT GTGGGTTCCGAAGGTTAAACCCAAATGACACCTGTCTGGCTAGCTGTATGAAAAGCAGAC ACTCGTGCTCACCATGTGCTCCGATAATAGGAAAATATGCTGGAGAGGTTTTGCAATTTG TTGGTGGCATTGGCCTCTTCTTCAGTTTTACAGAGATCCTGGGTGTTTGGCTGACCTACA GATACAGGAACCAGAAAGATCCTCGTGCTAATCCTAGCGCATTCCTTTGATGAGAAAACA AGAACAATGTTTCATATTCTCATCTTGTACACTTCCTCTAACTTTACGTTTAAGCTAATT TGCCTGTTAAAGGAAACAGTATCTGAAAAACTACGTTATTGACAGTGGAATTATATATTT TTACTTTATGTTTCTCTAAATGTTTATCATTTGTCCATTGCTGAGAAAAATCTGAAACTT GTGGTCTCCTCTGTACCTCAGTGGTACCTGTAATCTCCTATATTAACAGTGTCTGGCACT GTCCACTGTTGCCTTTCTTAGCGTTTTTACCTGCAGAGAAACTTTGTATGGCACTATTGT GTTGATTATATTGTGAATCTAAATGTGCATCTCACTGGAATGATTAATTGTATGTGGCAT TGTGCTGTGTCGATAGTTCCTACTGGAAAAAAGAGCTGAAGTGTATTAAAGCTGGAAAGT ATGATTCTATTATATTAAGTTCAGTAAGGGAAACCTCAATTCCCCCCAATTTTTTTTTTT TTTTTTGGTCTCTTTAGGAGAGATGTCATTGTGGTGAAAAGTGTTAATGTAAAAGTGATG ATTTAGTTCTAGTAGTCCTTCTGGTTATATTCATGTATTCTAGAAATAGCTATGTCTACA GGAAAGTGTGGTTTAGTTGCTGATTTTTACAGGTAAGTGCAAAGGAGAAAAGGCCTCATG GATGTTGTAATGTGTAACATTTGCCTTTAGCCTTCAAAATGGAATGAATTTGAGAAATTC AGGAAGTATATCTATATAATCTTGATGTTCTTTTATAATAATTTATAGTCCAAAAGGCTG CATTTTTAAACGGGTTACTATTAATGCATTGGCCCATATAGCAGAAAGATACTTGATTAT CTCAGAAATTGTTAAATACCCTTTTCATGAAATTTCTCAGTATTGTAACAGCAGCTTGTC AAATCAAAGACTATTTGAATATGATTGCCCATTATTTGAAATTGAAATAGTATTGTGGTT CTGTATATTATGTTAAAAAATTAAAATATGGAAACCTTTAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGCTGTGGCCGCAGGTCTCGGAGCGGGTCGGAGTCGCCGCGGGCGCGTAGCACACTG CAACCCCTACCCAAGCCCCGGTCTCCCCACCAGTGTCCCCGCTGCTGCCTCGCCTCGGCC AGGCCCCAAAGGCAAGGACAAAGAGGCTGTCCGGAGGCTCAGCCGGAGCCAGATTTTACC TGTAGAGGAGCCTGCCGGGAACCACAGGCTACAAGATGGTTTGCGGGGGCTTCGCTTGTT CCAAGAACTGCCTGTGTGCGCTGAACCTACTCTACACGTTGGTTAGTTTGTTGCTAATTG GAATTGCTGCCTGGGGCATTGGCTTTGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGG TCATCGCAGTGGGAATCTTCTTGTTCCTGATCGCATTAGTGGGGCTGATCGGAGCCGTAA AACACCATCAAGTGTTGCTTTTCTTTTACATGATTATTCTCTTACTTGTATTTATTTTTC AGTTTTCTGTATCATGTGCTTGTTTAGCCCTGAATCAGGGGCAACAGAGTCAGCTTCTGG AAGTTGGTTGGAACAACACAGCAAGTGCTCGAAATGACATCCAGAGAAATTTAAACTGCT GTGGGTTCCGAAGGTTAAACCCAAATGACACCTGTCTGGCTAGCTGTATGAAAAGCAGAC ACTCGTGCTCACCATGTGCTCCGATAATAGGAAAATATGCTGGAGAGGTTTTGCAATTTG TTGGTGGCATTGGCCTCTTCTTCAGTTTTACAGAGATCCTGGGTGTTTGGCTGACCTACA GATACAGGAACCAGAAAGATCCTCGTGCTAATCCTAGCGCATTCCTTTGATGAGAAAACA AGAACAATGTTTCATATTCTCATCTTGTACACTTCCTCTAACTTTACGTTTAAGCTAATT TGCCTGTTAAAGGAAACAGTATCTGAAAAACTACGTTATTGACAGTGGAATTATATATTT TTACTTTATGTTTCTCTAAATGTTTATCATTTGTCCATTGCTGAGAAAAATCTGAAACTT GTGGTCTCCTCTGTACCTCAGTGGTACCTGTAATCTCCTATATTAACAGTGTCTGGCACT GTCCACTGTTGCCTTTCTTAGCGTTTTTACCTGCAGAGAAACTTTGTATGGCACTATTGT GTTGATTATATTGTGAATCTAAATGTGCATCTCACTGGAATGATTAATTGTATGTGGCAT TGTGCTGTGTCGATAGTTCCTACTGGAAAAAAGAGCTGAAGTGTATTAAAGCTGGAAAGT ATGATTCTATTATATTAAGTTCAGTAAGGGAAACCTCAATTCCCCCCAATTTTTTTTTTT TTTTTTGGTCTCTTTAGGAGAGATGTCATTGTGGTGAAAAGTGTTAATGTAAAAGTGATG ATTTAGTTCTAGTAGTCCTTCTGGTTATATTCATGTATTCTAGAAATAGCTATGTCTACA GGAAAGTGTGGTTTAGTTGCTGATTTTTACAGGTAAGTGCAAAGGAGAAAAGGCCTCATG GATGTTGTAATGTGTAACATTTGCCTTTAGCCTTCAAAATGGAATGAATTTGAGAAATTC AGGAAGTATATCTATATAATCTTGATGTTCTTTTATAATAATTTATAGTCCAAAAGGCTG CATTTTTAAACGGGTTACTATTAATGCATTGGCCCATATAGCAGAAAGATACTTGATTAT CTCAGAAATTGTTAAATACCCTTTTCATGAAATTTCTCAGTATTGTAACAGCAGCTTGTC AAATCAAAGACTATTTGAATATGATTGCCCATTATTTGAAATTGAAATAGTATTGTGGTT CTGTATATTATGTTAAAAAATTAAAATATGGAAACCTTTAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 4-277, gnl|bosTau2|chr4 (8155670-8155933) | |
| 4-277, gnl|Hg17|chr7 (16566630-16566894) | |
| 4-277, gnl|Mm7|chr12 (33882113-33881860) | |
| 278-446, gnl|bosTau2|chr4 (8181802-8181970) | |
| 278-446, gnl|canFam2|chr14 (34233121-34233298) | |
| 278-446, gnl|danRer3|chr19 (46664757-46664580) | |
| 278-446, gnl|dasNov1|scaffold_104528 (4339-4507) | |
| 278-446, gnl|echTel1|scaffold_269948 (930-1094) | |
| 278-446, gnl|fr1|chrUn (248125572-248125395) | |
| 278-446, gnl|galGal2|chr2 (27852966-27853143) | |
| 278-446, gnl|hg17|chr7 (16589074-16589251) | |
| 278-446, gnl|Hg17|chr7 (16589075-16589243) | |
| 278-446, gnl|loxAfr1|scaffold_92806 (4711-4535) | |
| 278-446, gnl|mm7|chr12 (33863685-33863509) | |
| 278-446, gnl|Mm7|chr12 (33863682-33863514) | |
| 278-446, gnl|monDom2|scaffold_57 (9703571-9703395) | |
| 278-446, gnl|oryCun1|scaffold_98748 (4223-4399) | |
| 278-446, gnl|panTro1|chr6 (17474989-17475166) | |
| 278-446, gnl|rheMac2|chr3 (109335751-109335574) | |
| 278-446, gnl|rn3|chr6 (54738833-54738657) | |
| 278-446, gnl|tetNig1|chrUn_random (78642275-78642452) | |
| 278-446, gnl|xenTro1|scaffold_23 (2426256-2426079) | |
| 530-640, gnl|bosTau2|chr4 (8184290-8184400) | |
| 530-640, gnl|Hg17|chr7 (16590665-16590775) | |
| 530-640, gnl|Mm7|chr12 (33861521-33861411) | |
| 642-755, gnl|bosTau2|chr4 (8185783-8185896) | |
| 642-755, gnl|Hg17|chr7 (16591868-16591981) | |
| 642-755, gnl|Mm7|chr12 (33860212-33860099) | |
| 1713-1839, gnl|bosTau2|chr10 (27234784-27234658) | |
| 1713-1839, gnl|Hg17|chr1 (12130588-12130462) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-277, gnl|bosTau2|chr4 (8155670-8155933) | |
| 4-277, gnl|Hg17|chr7 (16566630-16566894) | |
| 4-277, gnl|Mm7|chr12 (33882113-33881860) | |
| 278-446, gnl|bosTau2|chr4 (8181802-8181970) | |
| 278-446, gnl|canFam2|chr14 (34233121-34233298) | |
| 278-446, gnl|danRer3|chr19 (46664757-46664580) | |
| 278-446, gnl|dasNov1|scaffold_104528 (4339-4507) | |
| 278-446, gnl|echTel1|scaffold_269948 (930-1094) | |
| 278-446, gnl|fr1|chrUn (248125572-248125395) | |
| 278-446, gnl|galGal2|chr2 (27852966-27853143) | |
| 278-446, gnl|hg17|chr7 (16589074-16589251) | |
| 278-446, gnl|Hg17|chr7 (16589075-16589243) | |
| 278-446, gnl|loxAfr1|scaffold_92806 (4711-4535) | |
| 278-446, gnl|mm7|chr12 (33863685-33863509) | |
| 278-446, gnl|Mm7|chr12 (33863682-33863514) | |
| 278-446, gnl|monDom2|scaffold_57 (9703571-9703395) | |
| 278-446, gnl|oryCun1|scaffold_98748 (4223-4399) | |
| 278-446, gnl|panTro1|chr6 (17474989-17475166) | |
| 278-446, gnl|rheMac2|chr3 (109335751-109335574) | |
| 278-446, gnl|rn3|chr6 (54738833-54738657) | |
| 278-446, gnl|tetNig1|chrUn_random (78642275-78642452) | |
| 278-446, gnl|xenTro1|scaffold_23 (2426256-2426079) | |
| 530-640, gnl|bosTau2|chr4 (8184290-8184400) | |
| 530-640, gnl|Hg17|chr7 (16590665-16590775) | |
| 530-640, gnl|Mm7|chr12 (33861521-33861411) | |
| 642-755, gnl|bosTau2|chr4 (8185783-8185896) | |
| 642-755, gnl|Hg17|chr7 (16591868-16591981) | |
| 642-755, gnl|Mm7|chr12 (33860212-33860099) | |
| 1713-1839, gnl|bosTau2|chr10 (27234784-27234658) | |
| 1713-1839, gnl|Hg17|chr1 (12130588-12130462) |
| Expressed library(ies): 45 entry(ies) | More info |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
| mgp (2.53749) | |
| fco (1.25766) | |
| isp (1.20301) | |
| sag (1.09629) | |
| liv (0.585137) | |
| lin (0.582411) | |
| sin (0.524843) | |
| pro (0.512033) | |
| tra (0.492368) | |
| mga (0.480615) | |
| lyg (0.399308) | |
| elu (0.385356) | |
| sme (0.305437) | |
| lun (0.300978) | |
| jej (0.296765) | |
| spl (0.286369) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (2.53749) | |
| fco (1.25766) | |
| isp (1.20301) | |
| sag (1.09629) | |
| liv (0.585137) | |
| lin (0.582411) | |
| sin (0.524843) | |
| pro (0.512033) | |
| tra (0.492368) | |
| mga (0.480615) | |
| lyg (0.399308) | |
| elu (0.385356) | |
| sme (0.305437) | |
| lun (0.300978) | |
| jej (0.296765) | |
| spl (0.286369) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| ldo (0.0970026) |