Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzb-d-13-0-UI.s1.3

Sequence:


               
               GAATCTCCCCCTCCTGGCCCTGGTTGCTCTGTCACTCACACCTGCCACTGTCCCCCCCCC
CACCACTGCACGCACACTCACACACTCACACACACTCTCCCATGCCCCGAAGCCAGTTCC
TGGGGCGCCACACCCTCCCTTGTTTGGGGTCCATGTTTGTTTACCAGAGTTTTTTCTGGG
GCCCCCCTTGATATCATGACGTCTCCAGGTCATTTCCGGTTCTGAGCTGCCCTGGTTCCT
CCTTCCGTGCCCCACTGCCTTCTGCTCCCATCCAGCCTTTCCCACACCAGTAGATATTAA
GTTTGGAGGTTTCTTTTGTATTTTGGAGGTTTTCTGTGATCTATCTCCTGTCCCTCTCTC
CTACCCGCCCCCCACCCCCAGTCCTCACATGGAAATCAATAATGCATTTGTGCCTTCTGT
GAGAGATGGGGGGACAAATGGTCCCAGGTGTCCCCACTTCCCAGCCCTCCCTCCCTCCCT
CCCTCTCCAGGTCCCCCCTCAGCAATAAGAGCTTCCCTCCACCGTCTCCCTCCCCTCCCT
GTAGTTGGACAAATATATTTATATGATATGTATAACTATTCTAATAAAATGTGTTCTTAT
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCTCCCCCTCCTGGCCCTGGTTGCTCTGTCACTCACACCTGCCACTGTCCCCCCCCC
CACCACTGCACGCACACTCACACACTCACACACACTCTCCCATGCCCCGAAGCCAGTTCC
TGGGGCGCCACACCCTCCCTTGTTTGGGGTCCATGTTTGTTTACCAGAGTTTTTTCTGGG
GCCCCCCTTGATATCATGACGTCTCCAGGTCATTTCCGGTTCTGAGCTGCCCTGGTTCCT
CCTTCCGTGCCCCACTGCCTTCTGCTCCCATCCAGCCTTTCCCACACCAGTAGATATTAA
GTTTGGAGGTTTCTTTTGTATTTTGGAGGTTTTCTGTGATCTATCTCCTGTCCCTCTCTC
CTACCCGCCCCCCACCCCCAGTCCTCACATGGAAATCAATAATGCATTTGTGCCTTCTGT
GAGAGATGGGGGGACAAATGGTCCCAGGTGTCCCCACTTCCCAGCCCTCCCTCCCTCCCT
CCCTCTCCAGGTCCCCCCTCAGCAATAAGAGCTTCCCTCCACCGTCTCCCTCCCCTCCCT
GTAGTTGGACAAATATATTTATATGATATGTATAACTATTCTAATAAAATGTGTTCTTAT
CAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-476, - strand, RNAz p=0.824106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-476, - strand, RNAz p=0.824106

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               59-602, gnl|bosTau2|chr5 (25283637-25284170)
               

               
               59-602, gnl|Hg17|chr12 (52391666-52391139)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-602, gnl|bosTau2|chr5 (25283637-25284170)
               

               
               59-602, gnl|Hg17|chr12 (52391666-52391139)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

	59-602, gnl\|bosTau2\|chr5 (25283637-25284170)
	59-602, gnl\|Hg17\|chr12 (52391666-52391139)