Ss1.1-mCP1-MI-P-CP1-nzb-g-02-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACACTCCCCGGCCAGAGCCTCCTCGGCTTCTTTTTTTCCCTCCCCCAGCAGCTTGTTA CCCCAGCTGCCTCCATTTCCTTAAGGAAGGGTTTTTTTCTCTCTCCCTCCCCCACACCGT AGCGGCGCGCGAGCGGGCCGGGCGGGCGGCCGAGTTTTCCAAGAAATAACTTCACCAAGA TGTCCAGTGATCGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGTAGTTCAG ATGCGGACCAGCGAGACCCAGCCGCTCCAGAGCCAGAAGAACAAGAAGAAAGAAAACCTT CTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCAAAACCACTGCTAAGTTATCCA CTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAATAACCCTTGATCCTCCTCCTAACT GCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCGACTATACTTGGTCCAC CAGGTTCTGTATATGAAGGTGGTGTATTTTTTCTGGATATCACATTTTCATCTGATTATC CATTTAAACCACCAAAGGTTACTTTCCGCACCAGAATCTATCACTGCAACATCAACAGTC AGGGAGTCATCTGCCTGGACATTCTTAAAGACAACTGGAGTCCTGCTTTGACTATTTCAA AAGTTTTGCTGTCGATTTGTTCACTTTTGACAGACTGCAACCCTGCGGATCCTCTGGTTG GAAGCATAGCCACTCAGTATTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAGT GGACCAAGAGATACGCAACATAATTCACATAATTTGTATGCAGTGCGAAGGAGCAGAAGG CATCTTCTCACTGTGCTGCAAATCTTTATAGCCTTTACAATACGGACTTCTGTGTATATG TTATACTGATTCTACTCTGCTTTTATCCTTTGGAGACTGGGAGACTCCCCAAAAAGGTAA ATGCTATCAAGAGTAGAACTTTGTAGCTGTAGATTAGTTATGTTTAAAACGCCTACTTGC AAGTCTTGCTTCTTTGGGATATCAAAATGTATTTTGTGATGTACTAAGGATACTGGTCCT GAAGTCTACCAAATATTATAGTGCATTTTAGCCTAATTCATTATCTGTATGAAGTTATAA AAGTAGCTGTAGATGACTAGGAATTATGTCATTTGTATTAAACCCAGATCTATTTCTGAG TATGTGGTTCATGCTGTTGTGAAAAATGTTTTACCTTTTACCTTTGTCAGTTTGTAATGA GAGGATTTCCTTTTACCCTTTGTAGCTCAGAGAGCACCTGATGTATCATCTCAAACACAA TAAACATGCTCCTGAAGGCATAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACACTCCCCGGCCAGAGCCTCCTCGGCTTCTTTTTTTCCCTCCCCCAGCAGCTTGTTA CCCCAGCTGCCTCCATTTCCTTAAGGAAGGGTTTTTTTCTCTCTCCCTCCCCCACACCGT AGCGGCGCGCGAGCGGGCCGGGCGGGCGGCCGAGTTTTCCAAGAAATAACTTCACCAAGA TGTCCAGTGATCGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGTAGTTCAG ATGCGGACCAGCGAGACCCAGCCGCTCCAGAGCCAGAAGAACAAGAAGAAAGAAAACCTT CTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCAAAACCACTGCTAAGTTATCCA CTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAATAACCCTTGATCCTCCTCCTAACT GCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCGACTATACTTGGTCCAC CAGGTTCTGTATATGAAGGTGGTGTATTTTTTCTGGATATCACATTTTCATCTGATTATC CATTTAAACCACCAAAGGTTACTTTCCGCACCAGAATCTATCACTGCAACATCAACAGTC AGGGAGTCATCTGCCTGGACATTCTTAAAGACAACTGGAGTCCTGCTTTGACTATTTCAA AAGTTTTGCTGTCGATTTGTTCACTTTTGACAGACTGCAACCCTGCGGATCCTCTGGTTG GAAGCATAGCCACTCAGTATTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAGT GGACCAAGAGATACGCAACATAATTCACATAATTTGTATGCAGTGCGAAGGAGCAGAAGG CATCTTCTCACTGTGCTGCAAATCTTTATAGCCTTTACAATACGGACTTCTGTGTATATG TTATACTGATTCTACTCTGCTTTTATCCTTTGGAGACTGGGAGACTCCCCAAAAAGGTAA ATGCTATCAAGAGTAGAACTTTGTAGCTGTAGATTAGTTATGTTTAAAACGCCTACTTGC AAGTCTTGCTTCTTTGGGATATCAAAATGTATTTTGTGATGTACTAAGGATACTGGTCCT GAAGTCTACCAAATATTATAGTGCATTTTAGCCTAATTCATTATCTGTATGAAGTTATAA AAGTAGCTGTAGATGACTAGGAATTATGTCATTTGTATTAAACCCAGATCTATTTCTGAG TATGTGGTTCATGCTGTTGTGAAAAATGTTTTACCTTTTACCTTTGTCAGTTTGTAATGA GAGGATTTCCTTTTACCCTTTGTAGCTCAGAGAGCACCTGATGTATCATCTCAAACACAA TAAACATGCTCCTGAAGGCATAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 96-542, gnl|bosTau2|chr5 (26149727-26149290) | |
| 96-542, gnl|Hg17|chrX (14021959-14022409) | |
| 96-542, gnl|Mm7|chr6 (39758861-39758481) | |
| 556-703, gnl|bosTau2|chr27 (30764726-30764579) | |
| 556-703, gnl|canFam2|chr23 (23219715-23219526) | |
| 556-703, gnl|danRer3|chr23 (35892249-35892085) | |
| 556-703, gnl|dasNov1|scaffold_32754 (43895-43705) | |
| 556-703, gnl|echTel1|scaffold_245963 (9298-9109) | |
| 556-703, gnl|fr1|chrUn (197653196-197653359) | |
| 556-703, gnl|galGal2|chr2 (36160130-36160309) | |
| 556-703, gnl|hg17|chr3 (23549025-23549219) | |
| 556-703, gnl|Hg17|chr3 (23549047-23549194) | |
| 556-703, gnl|loxAfr1|scaffold_52403 (7970-8143) | |
| 556-703, gnl|mm7|chr14 (16405033-16404845) | |
| 556-703, gnl|Mm7|chr14 (16405013-16404866) | |
| 556-703, gnl|monDom2|scaffold_7 (79371043-79371233) | |
| 556-703, gnl|oryCun1|scaffold_110536 (9249-9073) | |
| 556-703, gnl|panTro1|chr2 (24483617-24483811) | |
| 556-703, gnl|rheMac2|chr2 (165832864-165833058) | |
| 556-703, gnl|rn3|chr15 (8805837-8806026) | |
| 556-703, gnl|tetNig1|chrUn_random (134839863-134839702) | |
| 556-703, gnl|xenTro1|scaffold_43 (1255141-1255315) | |
| 1150-1348, gnl|bosTau2|chr5 (26148567-26148364) | |
| 1150-1348, gnl|Hg17|chrX (14023005-14023210) | |
| 1150-1348, gnl|Mm7|chr6 (39757888-39757700) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-542, gnl|bosTau2|chr5 (26149727-26149290) | |
| 96-542, gnl|Hg17|chrX (14021959-14022409) | |
| 96-542, gnl|Mm7|chr6 (39758861-39758481) | |
| 556-703, gnl|bosTau2|chr27 (30764726-30764579) | |
| 556-703, gnl|canFam2|chr23 (23219715-23219526) | |
| 556-703, gnl|danRer3|chr23 (35892249-35892085) | |
| 556-703, gnl|dasNov1|scaffold_32754 (43895-43705) | |
| 556-703, gnl|echTel1|scaffold_245963 (9298-9109) | |
| 556-703, gnl|fr1|chrUn (197653196-197653359) | |
| 556-703, gnl|galGal2|chr2 (36160130-36160309) | |
| 556-703, gnl|hg17|chr3 (23549025-23549219) | |
| 556-703, gnl|Hg17|chr3 (23549047-23549194) | |
| 556-703, gnl|loxAfr1|scaffold_52403 (7970-8143) | |
| 556-703, gnl|mm7|chr14 (16405033-16404845) | |
| 556-703, gnl|Mm7|chr14 (16405013-16404866) | |
| 556-703, gnl|monDom2|scaffold_7 (79371043-79371233) | |
| 556-703, gnl|oryCun1|scaffold_110536 (9249-9073) | |
| 556-703, gnl|panTro1|chr2 (24483617-24483811) | |
| 556-703, gnl|rheMac2|chr2 (165832864-165833058) | |
| 556-703, gnl|rn3|chr15 (8805837-8806026) | |
| 556-703, gnl|tetNig1|chrUn_random (134839863-134839702) | |
| 556-703, gnl|xenTro1|scaffold_43 (1255141-1255315) | |
| 1150-1348, gnl|bosTau2|chr5 (26148567-26148364) | |
| 1150-1348, gnl|Hg17|chrX (14023005-14023210) | |
| 1150-1348, gnl|Mm7|chr6 (39757888-39757700) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| fat (1.17942) | |
| tbr (1.07925) | |
| bfe (1.049) | |
| cbe (0.956938) | |
| lyg (0.798616) | |
| ret (0.643666) | |
| fco (0.628832) | |
| isp (0.601504) | |
| pro (0.512033) | |
| csk (0.422238) | |
| kid (0.389206) | |
| thg (0.380373) | |
| tra (0.369276) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| ebs (0.354904) | |
| cbl (0.344392) | |
| sme (0.305437) | |
| liv (0.292569) | |
| ste (0.270416) | |
| ova (0.258264) | |
| sug (0.254582) | |
| ese (0.253004) | |
| tes (0.207814) | |
| fli (0.202881) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| csp (0.161186) | |
| mga (0.160205) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| bla (0.124347) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (1.17942) | |
| tbr (1.07925) | |
| bfe (1.049) | |
| cbe (0.956938) | |
| lyg (0.798616) | |
| ret (0.643666) | |
| fco (0.628832) | |
| isp (0.601504) | |
| pro (0.512033) | |
| csk (0.422238) | |
| kid (0.389206) | |
| thg (0.380373) | |
| tra (0.369276) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| ebs (0.354904) | |
| cbl (0.344392) | |
| sme (0.305437) | |
| liv (0.292569) | |
| ste (0.270416) | |
| ova (0.258264) | |
| sug (0.254582) | |
| ese (0.253004) | |
| tes (0.207814) | |
| fli (0.202881) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| csp (0.161186) | |
| mga (0.160205) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| bla (0.124347) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |