Ss1.1-mCP1-MI-P-CP1-nzb-g-14-0-UI.s1.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCTGTGGCGGCAGAATAGGCGGTTACGGTGGAGTCTGAATAGACTACGGCAGTGAG GCCGCGCAGGTTTCTCCCCTGGTCTGGTAAACCCCCAGGGCCCTCGCCATGGACTTCCAA CATCGCCCCGGCGGCAAGACCGGGAGCGGGGGTGTGGCCTCCTCCTCTGAGAGCAACCGG GATCGCAGGGAGCGCCTGCGGCAGCTGGCCCTGGAAACCATCGACATCAACAAGGACCCT TACTTCATGAAGAACCACCTGGGCTCCTACGAGTGCAAGCTGTGCCTGACACTGCACAAC AATGAGGGGAGCTACCTTGCGCACACCCAAGGGAAGAAGCATCAGACCAACCTGGCCCGG CGAGCAGCCAAGGAGGCCAAGGAGGCCCCCGCCCAGCCGGCGCCAGAGAAGGTCAAGGTG GAGGTGAAGAAGTTTGTGAAGATTGGCCGCCCAGGCTACAAAGTGACCAAGCAGAGGGAC ACAGAGATGGGCCAGCAGAGCCTCCTGTTCCAGATTGATTACCCTGAGGTCGCTGAGGGC ATCACACCCCGCCACCGCTTCATGTCAGCCTACGAGCAGCGGATTGAACCCCCAGACCGG CGCTGGCAGTACTTGCTCATGGCCGCTGAGCCCTATGAGACCATTGCCTTCAAGGTTCCC AGCAGGGAGATCGACAAGGCTGAAGGCAAGTTTTGGACTCACTGGAACCGGGAAACCAAG CAGTTTTTCCTCCAGTTCCACTTTAAGATGGAAAAGCCACCAGCCCCACCAAGCCTCCCT GCCGGGCCTCCCGGGGTGAAGCGGCCCCCACCCCCGCTGATGAATGGTTTGCCTCCTAGG CCTCCACTGCCAGAGTCTTTGCCCCCGCCTCCACCTGGAGGCCTGCCTCTGCCACCTATG CCGCCCAGTGGGCCTGCACCCTCGGGGCCCCCCGGCCCTCCTCAGCTACCCCCACCAGCT CCTGGTGTCCACCCCCCAGCCCCAGTGGTCCATCCTCCAGCATCTGGAGTGCACCCTCCT GCTCCTGGGGTGCATCCCCCAGCTCCTGGGGTCCACCCCCCAGCACCAGTGGTCCACCCC CCAACATCTGGGGTCCATCCCCCTGCTCCTGGGGTCCACCCTCCAGCCCCAGGGGTCCAT CCTCCCCCATCTGCTGGGGTTCACCCCCAGGCCCCAGGGGTGCACCCACCAGCTCCAGCA GTTCACCCCCAGGCCCCAGGGGTGCACCCACCAGCTCCAGCAGTTCACCCCCAGGCCCCA GGAGTCCATCCACCAGCTCCTGGGGTCCATCCACCAGCCCCAGGGATCCACCCCCAGCCT CCTGGGGTTCACCCTCCACCTCCTGGGGTCCATCCTCCAGCTCCTGGAGTCCACCCCCAG CCTCCTGGAGTTCACCCCTCAAATCCCGGGGTGCATCCCCCAACTCCCATGCCTCCGATG TTGAGGCCCCCACTGCCCTCCGAAGGCCCTGGGAACATGCCTCCCCCTCCCCCCACCAAC TGAAAAGCTACCCCTGTGCCAGCAAGTATGCTTTTGTTTTCCTGTGTTCCACCCTTGGAA TAAAATGGGGTGTTTTTATACAGGGCTGGGCCGTGTGCCCAGAGCCTATTAAAAAGCCTC TGCTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCTGTGGCGGCAGAATAGGCGGTTACGGTGGAGTCTGAATAGACTACGGCAGTGAG GCCGCGCAGGTTTCTCCCCTGGTCTGGTAAACCCCCAGGGCCCTCGCCATGGACTTCCAA CATCGCCCCGGCGGCAAGACCGGGAGCGGGGGTGTGGCCTCCTCCTCTGAGAGCAACCGG GATCGCAGGGAGCGCCTGCGGCAGCTGGCCCTGGAAACCATCGACATCAACAAGGACCCT TACTTCATGAAGAACCACCTGGGCTCCTACGAGTGCAAGCTGTGCCTGACACTGCACAAC AATGAGGGGAGCTACCTTGCGCACACCCAAGGGAAGAAGCATCAGACCAACCTGGCCCGG CGAGCAGCCAAGGAGGCCAAGGAGGCCCCCGCCCAGCCGGCGCCAGAGAAGGTCAAGGTG GAGGTGAAGAAGTTTGTGAAGATTGGCCGCCCAGGCTACAAAGTGACCAAGCAGAGGGAC ACAGAGATGGGCCAGCAGAGCCTCCTGTTCCAGATTGATTACCCTGAGGTCGCTGAGGGC ATCACACCCCGCCACCGCTTCATGTCAGCCTACGAGCAGCGGATTGAACCCCCAGACCGG CGCTGGCAGTACTTGCTCATGGCCGCTGAGCCCTATGAGACCATTGCCTTCAAGGTTCCC AGCAGGGAGATCGACAAGGCTGAAGGCAAGTTTTGGACTCACTGGAACCGGGAAACCAAG CAGTTTTTCCTCCAGTTCCACTTTAAGATGGAAAAGCCACCAGCCCCACCAAGCCTCCCT GCCGGGCCTCCCGGGGTGAAGCGGCCCCCACCCCCGCTGATGAATGGTTTGCCTCCTAGG CCTCCACTGCCAGAGTCTTTGCCCCCGCCTCCACCTGGAGGCCTGCCTCTGCCACCTATG CCGCCCAGTGGGCCTGCACCCTCGGGGCCCCCCGGCCCTCCTCAGCTACCCCCACCAGCT CCTGGTGTCCACCCCCCAGCCCCAGTGGTCCATCCTCCAGCATCTGGAGTGCACCCTCCT GCTCCTGGGGTGCATCCCCCAGCTCCTGGGGTCCACCCCCCAGCACCAGTGGTCCACCCC CCAACATCTGGGGTCCATCCCCCTGCTCCTGGGGTCCACCCTCCAGCCCCAGGGGTCCAT CCTCCCCCATCTGCTGGGGTTCACCCCCAGGCCCCAGGGGTGCACCCACCAGCTCCAGCA GTTCACCCCCAGGCCCCAGGGGTGCACCCACCAGCTCCAGCAGTTCACCCCCAGGCCCCA GGAGTCCATCCACCAGCTCCTGGGGTCCATCCACCAGCCCCAGGGATCCACCCCCAGCCT CCTGGGGTTCACCCTCCACCTCCTGGGGTCCATCCTCCAGCTCCTGGAGTCCACCCCCAG CCTCCTGGAGTTCACCCCTCAAATCCCGGGGTGCATCCCCCAACTCCCATGCCTCCGATG TTGAGGCCCCCACTGCCCTCCGAAGGCCCTGGGAACATGCCTCCCCCTCCCCCCACCAAC TGAAAAGCTACCCCTGTGCCAGCAAGTATGCTTTTGTTTTCCTGTGTTCCACCCTTGGAA TAAAATGGGGTGTTTTTATACAGGGCTGGGCCGTGTGCCCAGAGCCTATTAAAAAGCCTC TGCTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 354-1466, - strand, RNAz p=0.996313 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 354-1466, - strand, RNAz p=0.996313 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 65-235, gnl|bosTau2|chr7 (18175512-18175682) | |
| 65-235, gnl|Hg17|chr19 (2194376-2195077) | |
| 65-235, gnl|Mm7|chr10 (80590808-80590976) | |
| 354-463, gnl|bosTau2|chr7 (18177147-18177256) | |
| 354-463, gnl|canFam2|chr20 (59932581-59932452) | |
| 354-463, gnl|danRer3|chr2 (48094765-48094879) | |
| 354-463, gnl|dasNov1|scaffold_211066 (3099-3228) | |
| 354-463, gnl|echTel1|scaffold_290267 (44999-45127) | |
| 354-463, gnl|fr1|chrUn (192179489-192179609) | |
| 354-463, gnl|galGal2|chr28 (1049464-1049346) | |
| 354-463, gnl|hg17|chr19 (2196435-2196564) | |
| 354-463, gnl|Hg17|chr19 (2196445-2196554) | |
| 354-463, gnl|mm7|chr10 (80592400-80592528) | |
| 354-463, gnl|Mm7|chr10 (80592409-80592518) | |
| 354-463, gnl|monDom2|scaffold_75 (4281658-4281784) | |
| 354-463, gnl|oryCun1|scaffold_208603 (489-579) | |
| 354-463, gnl|panTro1|chr20 (2309939-2310068) | |
| 354-463, gnl|rheMac2|chr19 (2046808-2046935) | |
| 354-463, gnl|rn3|chr7 (10422059-10421931) | |
| 354-463, gnl|tetNig1|chr15 (4748833-4748714) | |
| 354-463, gnl|xenTro1|scaffold_296 (366010-365893) | |
| 511-656, gnl|bosTau2|chr7 (18178213-18178358) | |
| 511-656, gnl|Hg17|chr19 (2197878-2198023) | |
| 511-656, gnl|Mm7|chr10 (80593197-80593342) | |
| 1349-1630, gnl|bosTau2|chr21 (17632575-17632290) | |
| 1349-1630, gnl|Hg17|chr19 (2199391-2199652) | |
| 1349-1630, gnl|Mm7|chr13 (72535898-72535626) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-235, gnl|bosTau2|chr7 (18175512-18175682) | |
| 65-235, gnl|Hg17|chr19 (2194376-2195077) | |
| 65-235, gnl|Mm7|chr10 (80590808-80590976) | |
| 354-463, gnl|bosTau2|chr7 (18177147-18177256) | |
| 354-463, gnl|canFam2|chr20 (59932581-59932452) | |
| 354-463, gnl|danRer3|chr2 (48094765-48094879) | |
| 354-463, gnl|dasNov1|scaffold_211066 (3099-3228) | |
| 354-463, gnl|echTel1|scaffold_290267 (44999-45127) | |
| 354-463, gnl|fr1|chrUn (192179489-192179609) | |
| 354-463, gnl|galGal2|chr28 (1049464-1049346) | |
| 354-463, gnl|hg17|chr19 (2196435-2196564) | |
| 354-463, gnl|Hg17|chr19 (2196445-2196554) | |
| 354-463, gnl|mm7|chr10 (80592400-80592528) | |
| 354-463, gnl|Mm7|chr10 (80592409-80592518) | |
| 354-463, gnl|monDom2|scaffold_75 (4281658-4281784) | |
| 354-463, gnl|oryCun1|scaffold_208603 (489-579) | |
| 354-463, gnl|panTro1|chr20 (2309939-2310068) | |
| 354-463, gnl|rheMac2|chr19 (2046808-2046935) | |
| 354-463, gnl|rn3|chr7 (10422059-10421931) | |
| 354-463, gnl|tetNig1|chr15 (4748833-4748714) | |
| 354-463, gnl|xenTro1|scaffold_296 (366010-365893) | |
| 511-656, gnl|bosTau2|chr7 (18178213-18178358) | |
| 511-656, gnl|Hg17|chr19 (2197878-2198023) | |
| 511-656, gnl|Mm7|chr10 (80593197-80593342) | |
| 1349-1630, gnl|bosTau2|chr21 (17632575-17632290) | |
| 1349-1630, gnl|Hg17|chr19 (2199391-2199652) | |
| 1349-1630, gnl|Mm7|chr13 (72535898-72535626) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fty (0.351679) | |
| fce (0.271592) | |
| jej (0.197844) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| fce (0.271592) | |
| jej (0.197844) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) |