Ss1.1-mCP1-MI-P-CP1-nzb-g-16-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGTACCAGCGGCCTGGATGTGGGGAAGATCGAGGAAATGGAGAAGATGCTAAAAGAAG CTCACGCGGAGAAGAGCCGGCTCATGGAGTCAAGGGAGCGGGAGATGGAGCTGAGGCGGC AGGCTCTGGAGGAGGAGCGGAGGCGGCGGGAGCAGGTGGAACGGAGGCTGCAGAGCGAGA GTGCCCGGAGGCAGCAGCTGGTGGAGAAGGAGGTCAAGATGCGGGAGAAACAGTTTTCAC AGGCACGACCCCTGACCCGCTACCTGCCAATCAGGAAGGAGGACTTTGACCTGAAGACCC ACATTGAGTCGTCAGGCCACGGTGTGGATACGTGCCTGCACGTGGTGCTCAGCAGCAAGG TCTGCCGTGGCTACTTGGTCAAGATGGGCGGCAAGATTAAATCATGGAAGAAGCGCTGGT TTGTCTTCGATCGGCTCAAGCGCACCCTCTCCTATTATGTGGACAAGCATGAGACGAAGC TGAAGGGGGTCATCTATTTCCAGGCCATCGAGGAAGTGTACTATGACCACCTGCGCAGTG CAGCCAAGAGCCCGAACCCAGCCCTCACCTTCTGTGTGAAGACCCACGACCGGCTGTACT ACATGGTGGCCCCATCCGCGGAGGCCATGCGCATCTGGATGGACGTCATCGTCACCGGGG CTGAGGGCTACACTCAGTTCATGAACTGACGGAATGGGCCTCTGGCCCCTTGGGCGGGCC CCAGGACCCTGCCAACTGCCTGCGCTCTGCTCGCCCCTGGAGCCAGAGTGGCACCCTGGG CCTTGGGCCTCACAGGAATGCTGCCAGAGGCCCTGAAGGGCAGAGCATACTGGGGCTTTT GTGCCAGAAGAGACTCTGGAACATTCTGTAAGGAGCTCTTCCTGTGAGTTTCTGAGCTCT GGCCCTCTAAAGAACCAGCCAGGAGATAAAAGTTGGGGAGGGGGCCTTGTTGCCTCCTGG AGCCCAGAACTCGCAATAACCCTTCAGGGTCCTGCCCCGGGCCCAGACAGGCAAGGAGCT GTCACAGGGGGGCCCCTCTGCCCTGACCTGGCACCTGCGCTCCCCAGCCTGTGTTCTCTT TTGTTAAGGACAACTTATAGTACCAGAATCTGCCAAAGATCCCCTCTTGCCTCAGCCCCC TCTGCAGGGGCCTTGGGGGCTGAGAGAGCCACATCCAGAGTGGGGTAACAGCTCAGGCGG TGTTCTTCTCAAACCCTGCTCTAGCCCGTTGTTGACCCATGTTGATTACTTTGCCAAGGG CCAGAGACCACGGGTGTCATCCTTCAGGTCCCAGCCTCTCCCCTTTTTGCAGACCCAGCA CCATGGTCACCGTAGTGACTGCTTCATTGCCATGGTTACATACTAATTGCCGTGGCTCTG TGGCTCAGCCTGCTGCTTCAACTGTGGGCCCGGCTGAGGGTACGTGCCATTATCTCTCCA GCCCAGGTCCTTGGGCATCTCCACCTGGGGGGACGGGACTGAACACCTTCTCCCCCCCAA GCCTGTGTCTCCAGGCCCTGATATGTAGCCTGCCGGCCTCCAGTCCAACCCTCTCCCTTC CACTCGTGCCTTGCTTAGAGCCAGAAGGGACGAAGCCGGGAACTAGAGACCAGAGGAGGA GCCACTGGCTGAGAGAGGAAGCTGGAAGGGCTGTCCTCGGGGTTTGTTATGGGGCTGAGC TTCTGATGGGCAGAGGGTTGCTCAGATGCTCCCTGAGGGAAGCCCTGAGCAGGAGAGGAA GCAGCAGAGGGGGCCTTGAGATCTGGTTGCCCTTCCTGTGGCCTCAGAAGAGGGATGAAA CGGAGAGCAGAGGACCAGGCCTCCAGCTGTCTGGGCTCAGCCCTTAGCGCCTTAACACTA AGCCCACCTCCCTGTCCCTCTTCCTGGTCCTGGGCCATGGTTGCTGGGTCCAGGCTGGGT GTTTTTCAGTATTTGTAAGCATCTCAGCAGAACAATAAAGCATTTGGACTATGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGTACCAGCGGCCTGGATGTGGGGAAGATCGAGGAAATGGAGAAGATGCTAAAAGAAG CTCACGCGGAGAAGAGCCGGCTCATGGAGTCAAGGGAGCGGGAGATGGAGCTGAGGCGGC AGGCTCTGGAGGAGGAGCGGAGGCGGCGGGAGCAGGTGGAACGGAGGCTGCAGAGCGAGA GTGCCCGGAGGCAGCAGCTGGTGGAGAAGGAGGTCAAGATGCGGGAGAAACAGTTTTCAC AGGCACGACCCCTGACCCGCTACCTGCCAATCAGGAAGGAGGACTTTGACCTGAAGACCC ACATTGAGTCGTCAGGCCACGGTGTGGATACGTGCCTGCACGTGGTGCTCAGCAGCAAGG TCTGCCGTGGCTACTTGGTCAAGATGGGCGGCAAGATTAAATCATGGAAGAAGCGCTGGT TTGTCTTCGATCGGCTCAAGCGCACCCTCTCCTATTATGTGGACAAGCATGAGACGAAGC TGAAGGGGGTCATCTATTTCCAGGCCATCGAGGAAGTGTACTATGACCACCTGCGCAGTG CAGCCAAGAGCCCGAACCCAGCCCTCACCTTCTGTGTGAAGACCCACGACCGGCTGTACT ACATGGTGGCCCCATCCGCGGAGGCCATGCGCATCTGGATGGACGTCATCGTCACCGGGG CTGAGGGCTACACTCAGTTCATGAACTGACGGAATGGGCCTCTGGCCCCTTGGGCGGGCC CCAGGACCCTGCCAACTGCCTGCGCTCTGCTCGCCCCTGGAGCCAGAGTGGCACCCTGGG CCTTGGGCCTCACAGGAATGCTGCCAGAGGCCCTGAAGGGCAGAGCATACTGGGGCTTTT GTGCCAGAAGAGACTCTGGAACATTCTGTAAGGAGCTCTTCCTGTGAGTTTCTGAGCTCT GGCCCTCTAAAGAACCAGCCAGGAGATAAAAGTTGGGGAGGGGGCCTTGTTGCCTCCTGG AGCCCAGAACTCGCAATAACCCTTCAGGGTCCTGCCCCGGGCCCAGACAGGCAAGGAGCT GTCACAGGGGGGCCCCTCTGCCCTGACCTGGCACCTGCGCTCCCCAGCCTGTGTTCTCTT TTGTTAAGGACAACTTATAGTACCAGAATCTGCCAAAGATCCCCTCTTGCCTCAGCCCCC TCTGCAGGGGCCTTGGGGGCTGAGAGAGCCACATCCAGAGTGGGGTAACAGCTCAGGCGG TGTTCTTCTCAAACCCTGCTCTAGCCCGTTGTTGACCCATGTTGATTACTTTGCCAAGGG CCAGAGACCACGGGTGTCATCCTTCAGGTCCCAGCCTCTCCCCTTTTTGCAGACCCAGCA CCATGGTCACCGTAGTGACTGCTTCATTGCCATGGTTACATACTAATTGCCGTGGCTCTG TGGCTCAGCCTGCTGCTTCAACTGTGGGCCCGGCTGAGGGTACGTGCCATTATCTCTCCA GCCCAGGTCCTTGGGCATCTCCACCTGGGGGGACGGGACTGAACACCTTCTCCCCCCCAA GCCTGTGTCTCCAGGCCCTGATATGTAGCCTGCCGGCCTCCAGTCCAACCCTCTCCCTTC CACTCGTGCCTTGCTTAGAGCCAGAAGGGACGAAGCCGGGAACTAGAGACCAGAGGAGGA GCCACTGGCTGAGAGAGGAAGCTGGAAGGGCTGTCCTCGGGGTTTGTTATGGGGCTGAGC TTCTGATGGGCAGAGGGTTGCTCAGATGCTCCCTGAGGGAAGCCCTGAGCAGGAGAGGAA GCAGCAGAGGGGGCCTTGAGATCTGGTTGCCCTTCCTGTGGCCTCAGAAGAGGGATGAAA CGGAGAGCAGAGGACCAGGCCTCCAGCTGTCTGGGCTCAGCCCTTAGCGCCTTAACACTA AGCCCACCTCCCTGTCCCTCTTCCTGGTCCTGGGCCATGGTTGCTGGGTCCAGGCTGGGT GTTTTTCAGTATTTGTAAGCATCTCAGCAGAACAATAAAGCATTTGGACTATGAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 703-1049, - strand, RNAz p=0.989441 | |
| 1130-1648, - strand, RNAz p=0.99866 | |
| 1726-1840, + strand, RNAz p=0.832398 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 703-1049, - strand, RNAz p=0.989441 | |
| 1130-1648, - strand, RNAz p=0.99866 | |
| 1726-1840, + strand, RNAz p=0.832398 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AB177859, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 95-243, gnl|bosTau2|chr15 (14914789-14914641) | |
| 95-243, gnl|canFam2|chr5 (18105993-18105829) | |
| 95-243, gnl|danRer3|chr5 (24737141-24736987) | |
| 95-243, gnl|dasNov1|scaffold_62869 (9134-9299) | |
| 95-243, gnl|fr1|chrUn (187841349-187841512) | |
| 95-243, gnl|galGal2|chr24 (5333775-5333612) | |
| 95-243, gnl|hg17|chr11 (118023855-118024019) | |
| 95-243, gnl|Hg17|chr11 (118023855-118024003) | |
| 95-243, gnl|loxAfr1|scaffold_48071 (4207-4372) | |
| 95-243, gnl|mm7|chr9 (44630531-44630366) | |
| 95-243, gnl|Mm7|chr9 (44630529-44630381) | |
| 95-243, gnl|monDom2|scaffold_2 (119998076-119997912) | |
| 95-243, gnl|panTro1|chr9 (120033218-120033382) | |
| 95-243, gnl|rheMac2|chr14 (117049738-117049902) | |
| 95-243, gnl|rn3|chr8 (47663493-47663336) | |
| 95-243, gnl|tetNig1|chr7 (4815876-4816041) | |
| 95-243, gnl|xenTro1|scaffold_75 (143101-142941) | |
| 355-462, gnl|bosTau2|chr15 (14912716-14912609) | |
| 355-462, gnl|canFam2|chr5 (18103729-18103607) | |
| 355-462, gnl|danRer3|chr5 (24732472-24732363) | |
| 355-462, gnl|dasNov1|scaffold_26036 (4611-4489) | |
| 355-462, gnl|echTel1|scaffold_316289 (1092-976) | |
| 355-462, gnl|fr1|chrUn (187842266-187842375) | |
| 355-462, gnl|galGal2|chr24 (5333369-5333248) | |
| 355-462, gnl|hg17|chr11 (118026351-118026478) | |
| 355-462, gnl|Hg17|chr11 (118026355-118026462) | |
| 355-462, gnl|loxAfr1|scaffold_2224 (109140-109030) | |
| 355-462, gnl|mm7|chr9 (44628487-44628360) | |
| 355-462, gnl|Mm7|chr9 (44628481-44628374) | |
| 355-462, gnl|monDom2|scaffold_2 (119994664-119994546) | |
| 355-462, gnl|oryCun1|scaffold_141777 (4991-5118) | |
| 355-462, gnl|panTro1|chr9 (120035682-120035809) | |
| 355-462, gnl|rheMac2|chr14 (117052212-117052339) | |
| 355-462, gnl|rn3|chr8 (47660610-47660483) | |
| 355-462, gnl|tetNig1|chr16 (8115627-8115736) | |
| 355-462, gnl|xenTro1|scaffold_75 (142726-142615) | |
| 547-1973, gnl|bosTau2|chr15 (14903957-14902563) | |
| 547-1973, gnl|Hg17|chr11 (118032601-118033945) | |
| 547-1973, gnl|Mm7|chr9 (44622045-44620655) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-243, gnl|bosTau2|chr15 (14914789-14914641) | |
| 95-243, gnl|canFam2|chr5 (18105993-18105829) | |
| 95-243, gnl|danRer3|chr5 (24737141-24736987) | |
| 95-243, gnl|dasNov1|scaffold_62869 (9134-9299) | |
| 95-243, gnl|fr1|chrUn (187841349-187841512) | |
| 95-243, gnl|galGal2|chr24 (5333775-5333612) | |
| 95-243, gnl|hg17|chr11 (118023855-118024019) | |
| 95-243, gnl|Hg17|chr11 (118023855-118024003) | |
| 95-243, gnl|loxAfr1|scaffold_48071 (4207-4372) | |
| 95-243, gnl|mm7|chr9 (44630531-44630366) | |
| 95-243, gnl|Mm7|chr9 (44630529-44630381) | |
| 95-243, gnl|monDom2|scaffold_2 (119998076-119997912) | |
| 95-243, gnl|panTro1|chr9 (120033218-120033382) | |
| 95-243, gnl|rheMac2|chr14 (117049738-117049902) | |
| 95-243, gnl|rn3|chr8 (47663493-47663336) | |
| 95-243, gnl|tetNig1|chr7 (4815876-4816041) | |
| 95-243, gnl|xenTro1|scaffold_75 (143101-142941) | |
| 355-462, gnl|bosTau2|chr15 (14912716-14912609) | |
| 355-462, gnl|canFam2|chr5 (18103729-18103607) | |
| 355-462, gnl|danRer3|chr5 (24732472-24732363) | |
| 355-462, gnl|dasNov1|scaffold_26036 (4611-4489) | |
| 355-462, gnl|echTel1|scaffold_316289 (1092-976) | |
| 355-462, gnl|fr1|chrUn (187842266-187842375) | |
| 355-462, gnl|galGal2|chr24 (5333369-5333248) | |
| 355-462, gnl|hg17|chr11 (118026351-118026478) | |
| 355-462, gnl|Hg17|chr11 (118026355-118026462) | |
| 355-462, gnl|loxAfr1|scaffold_2224 (109140-109030) | |
| 355-462, gnl|mm7|chr9 (44628487-44628360) | |
| 355-462, gnl|Mm7|chr9 (44628481-44628374) | |
| 355-462, gnl|monDom2|scaffold_2 (119994664-119994546) | |
| 355-462, gnl|oryCun1|scaffold_141777 (4991-5118) | |
| 355-462, gnl|panTro1|chr9 (120035682-120035809) | |
| 355-462, gnl|rheMac2|chr14 (117052212-117052339) | |
| 355-462, gnl|rn3|chr8 (47660610-47660483) | |
| 355-462, gnl|tetNig1|chr16 (8115627-8115736) | |
| 355-462, gnl|xenTro1|scaffold_75 (142726-142615) | |
| 547-1973, gnl|bosTau2|chr15 (14903957-14902563) | |
| 547-1973, gnl|Hg17|chr11 (118032601-118033945) | |
| 547-1973, gnl|Mm7|chr9 (44622045-44620655) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| fce (0.543183) | |
| eep (0.367692) | |
| cty (0.31224) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| che (0.136314) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| eep (0.367692) | |
| cty (0.31224) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| che (0.136314) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |