Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzb-h-14-0-UI.s1.3

Sequence:


               
               AAGTTCCCCCATTAAAGAAGAGGAAACAAAAGGAGATAACATAGACAAAAGTCAAGGAAC
TCAGCAGAGACAGTTGTTATCCCGACTGCAAATTGACCCAGTAATGGCAGAAACTCTGCA
GATCAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGATCATTTAT
TCTGAAGAAGCCAAAGCTGTCTGAGGAGATAGTAGTGGCACCAAACCAGGAATCGGGGAT
GAAGACTGCAGATACCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGT
ACAACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCC
CCCAGGATACATGTCAGATCAAGAGGAGGACATGTGCTTTGAAGGAATGAGACCCGCACA
CCACACTGCAGCCTCACACGAGGGACTCGCGGGTCTCCTCCACCCACAGCAGTTGCACTT
GCTGAGCAGGCAGCTTGAGGACCCAGATGGTAGCTTTTCAAACGCTGAGATGAGTGAACT
GAGTGTGGCACAGAAACCAGAAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCGTGTAA
AAATGGGGATGAGTGTGCTTACCATCATCCTATTTCACCTTGCAAAGCTTTCCCTAACTG
TAAATTTGCTGAAAAATGTTTGTTTGTTCATCCAAATTGTAAATATGATGCAAAATGTAC
TAAACCAGATTGTCCCTTTACTCATATGAGTAGAAGAATTCCAGTACTGCCTCCAAAACC
AGTTACAACACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAA
GAAAATGGAATGTCCCTTCTATCATCCAAAACACTGTAGGTTTAACACTCAGTGCACGAG
ACCTGACTGTACATTTTACCATCCCACCATTACTGTACCACCACGACATGCCTTGAAATG
GATTCGACCTCAGACTAGTGAATGACATCCAGTCCTACCTGGCAGAAGACTGTGGAGCTT
GAAAGTTTCCATCTACTGATGAAAGATATTCTACAGAATTTGTCAAATCTTTGAAACTTG
GAATATATTGCTTTCATAATATGAAATTTATTGCCTATCTGAAGTGTCTAATTTTTCAAG
TTTGTAAGTTTATTAAGTGATTTTATTAACATTGGGTGTTTTTGTTGTTTTGACTATGAA
AAGAGTTTAAGGAAAAGCTGAATTCTATTAAAACATTTGAGGCGTGTTTGTACACTGCTG
TTTTCAAGTATCAGCATTTACAACGTGGTGTGATACCCTTGTCAGTCCTGATCGTCCAGT
TTGAGGCTACGGTGTCGCTGTGTGTATAGTGAGAGGTACCTGGGGGTGTCTTTATTCCAG
AAGTCGACAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTCCCCCATTAAAGAAGAGGAAACAAAAGGAGATAACATAGACAAAAGTCAAGGAAC
TCAGCAGAGACAGTTGTTATCCCGACTGCAAATTGACCCAGTAATGGCAGAAACTCTGCA
GATCAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGATCATTTAT
TCTGAAGAAGCCAAAGCTGTCTGAGGAGATAGTAGTGGCACCAAACCAGGAATCGGGGAT
GAAGACTGCAGATACCCTTCGGGTACTTTCAGGACACCTTATGCAGACACGAGATCTTGT
ACAACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCC
CCCAGGATACATGTCAGATCAAGAGGAGGACATGTGCTTTGAAGGAATGAGACCCGCACA
CCACACTGCAGCCTCACACGAGGGACTCGCGGGTCTCCTCCACCCACAGCAGTTGCACTT
GCTGAGCAGGCAGCTTGAGGACCCAGATGGTAGCTTTTCAAACGCTGAGATGAGTGAACT
GAGTGTGGCACAGAAACCAGAAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCGTGTAA
AAATGGGGATGAGTGTGCTTACCATCATCCTATTTCACCTTGCAAAGCTTTCCCTAACTG
TAAATTTGCTGAAAAATGTTTGTTTGTTCATCCAAATTGTAAATATGATGCAAAATGTAC
TAAACCAGATTGTCCCTTTACTCATATGAGTAGAAGAATTCCAGTACTGCCTCCAAAACC
AGTTACAACACCAGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAA
GAAAATGGAATGTCCCTTCTATCATCCAAAACACTGTAGGTTTAACACTCAGTGCACGAG
ACCTGACTGTACATTTTACCATCCCACCATTACTGTACCACCACGACATGCCTTGAAATG
GATTCGACCTCAGACTAGTGAATGACATCCAGTCCTACCTGGCAGAAGACTGTGGAGCTT
GAAAGTTTCCATCTACTGATGAAAGATATTCTACAGAATTTGTCAAATCTTTGAAACTTG
GAATATATTGCTTTCATAATATGAAATTTATTGCCTATCTGAAGTGTCTAATTTTTCAAG
TTTGTAAGTTTATTAAGTGATTTTATTAACATTGGGTGTTTTTGTTGTTTTGACTATGAA
AAGAGTTTAAGGAAAAGCTGAATTCTATTAAAACATTTGAGGCGTGTTTGTACACTGCTG
TTTTCAAGTATCAGCATTTACAACGTGGTGTGATACCCTTGTCAGTCCTGATCGTCCAGT
TTGAGGCTACGGTGTCGCTGTGTGTATAGTGAGAGGTACCTGGGGGTGTCTTTATTCCAG
AAGTCGACAGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9Y5A0_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9Y5A0_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               352-1252, gnl|bosTau2|chr10 (8522515-8523407)
               

               
               352-1252, gnl|Hg17|chr14 (88138993-88148120)
               

               
               352-1252, gnl|Mm7|chr12 (30551476-30552380)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               352-1252, gnl|bosTau2|chr10 (8522515-8523407)
               

               
               352-1252, gnl|Hg17|chr14 (88138993-88148120)
               

               
               352-1252, gnl|Mm7|chr12 (30551476-30552380)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               cte (0.58548)
               

               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	352-1252, gnl\|bosTau2\|chr10 (8522515-8523407)
	352-1252, gnl\|Hg17\|chr14 (88138993-88148120)
	352-1252, gnl\|Mm7\|chr12 (30551476-30552380)

	cte (0.58548)
	pro (0.512033)
	lin (0.436808)
	lun (0.300978)
	liv (0.292569)
	lnt (0.284616)
	lyg (0.266205)
	ova (0.258264)
	thg (0.253582)
	tra (0.246184)
	mgm (0.180343)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	csk (0.140746)
	nca (0.136874)
	ret (0.128733)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)