Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzb-k-01-0-UI.s1.3

Sequence:


               
               TACTGGCTGACCTTTGCTGTGGGCCGCTCTTTCCGAGGCTTTGGCTTCGGCCTGACCTTC
CTACCCCTGCTGTCCATGCTGGTGTGGAACTTCTACTACATGTTCGTGGTGGAGCCAGAA
CGCATGTTCACTGCCTCTGAGAGCCGCCTGGACTACCCCGACCACGCCCGCTCAGCCTTG
GATCACAGGCCCCGCCTCTGGGGCTGAGCTGCTCAACTCTTCTGCTCCTACCCCTGCTAC
CTGGGGGAGCAGAGCGAGGACTGTCCCCTGCTCTCCCAGAGTTGGGGTGCTGCCTTTCAT
CTTTGGAGCCTGGGATAATTATGAGGTAGGGACTCAGACATTCTTGCAGGGAAAGAGGTG
GACAGCCATGTTCCTTAAGGATGCTGAGGGCACAGGCCCAGGCCCAGGCCCAGGAGCAGA
GACACAGTCCCTTCCTGAGCAGCCTCCCACCACTGCCACTAGGGCCTGCCATGGCTGGAC
TCTTCTCCACTGTCCAGCCTCCTCTAAGGCAGCCAGTAGAGCCACAGCCAAAACTTCAAC
CATTTCTGTGCCAGTTGTCTGAGCCAAGTGCCTCAAGGAGACTGGAAATATTGCCCATGC
CTCAAGGTAAAGACTGGGCATCAGATCGAATAGGATTTTCATGTTTGGTGAAAATCTCCC
TGGAGGACTGGGTTCAGGACCTTCCACAACCGGCCTTCCCAGGCCCTTAGCCTCAGTCAA
ATCGATTACAGCTGCTCCAGCCCAGAGTGGCTGCCTCCTCCCTTCCAACCATTTAAGTCC
CTGTAACCTCACACCTCCAAACTGTCCAGAAGTCATGCCTCTCCATGGGAAGAGGAGTGG
ACAGAGAAATCTCCGTCCCAGAATGTGTGTGTGTGTGTGTGCCTGCACCCAAACATTTGG
TGGCTGGGGAGCGGATGGAAGGCATAATGGCTGACGTTAACCCCGTGTGAATGTGTGTAT
AACAATAAACGACTACCACCGCCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGGCTGACCTTTGCTGTGGGCCGCTCTTTCCGAGGCTTTGGCTTCGGCCTGACCTTC
CTACCCCTGCTGTCCATGCTGGTGTGGAACTTCTACTACATGTTCGTGGTGGAGCCAGAA
CGCATGTTCACTGCCTCTGAGAGCCGCCTGGACTACCCCGACCACGCCCGCTCAGCCTTG
GATCACAGGCCCCGCCTCTGGGGCTGAGCTGCTCAACTCTTCTGCTCCTACCCCTGCTAC
CTGGGGGAGCAGAGCGAGGACTGTCCCCTGCTCTCCCAGAGTTGGGGTGCTGCCTTTCAT
CTTTGGAGCCTGGGATAATTATGAGGTAGGGACTCAGACATTCTTGCAGGGAAAGAGGTG
GACAGCCATGTTCCTTAAGGATGCTGAGGGCACAGGCCCAGGCCCAGGCCCAGGAGCAGA
GACACAGTCCCTTCCTGAGCAGCCTCCCACCACTGCCACTAGGGCCTGCCATGGCTGGAC
TCTTCTCCACTGTCCAGCCTCCTCTAAGGCAGCCAGTAGAGCCACAGCCAAAACTTCAAC
CATTTCTGTGCCAGTTGTCTGAGCCAAGTGCCTCAAGGAGACTGGAAATATTGCCCATGC
CTCAAGGTAAAGACTGGGCATCAGATCGAATAGGATTTTCATGTTTGGTGAAAATCTCCC
TGGAGGACTGGGTTCAGGACCTTCCACAACCGGCCTTCCCAGGCCCTTAGCCTCAGTCAA
ATCGATTACAGCTGCTCCAGCCCAGAGTGGCTGCCTCCTCCCTTCCAACCATTTAAGTCC
CTGTAACCTCACACCTCCAAACTGTCCAGAAGTCATGCCTCTCCATGGGAAGAGGAGTGG
ACAGAGAAATCTCCGTCCCAGAATGTGTGTGTGTGTGTGTGCCTGCACCCAAACATTTGG
TGGCTGGGGAGCGGATGGAAGGCATAATGGCTGACGTTAACCCCGTGTGAATGTGTGTAT
AACAATAAACGACTACCACCGCCAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               431-545, - strand, RNAz p=0.843984
               

               
               666-783, - strand, RNAz p=0.864654

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-545, - strand, RNAz p=0.843984
               

               
               666-783, - strand, RNAz p=0.864654

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               536-649, - strand, RNAmicro p=0.965949

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               536-649, - strand, RNAmicro p=0.965949

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-980, gnl|bosTau2|chr3 (10364768-10365752)
               

               
               1-980, gnl|Hg17|chr1 (153074256-153075303)
               

               
               1-980, gnl|Mm7|chr3 (88443726-88442849)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-980, gnl|bosTau2|chr3 (10364768-10365752)
               

               
               1-980, gnl|Hg17|chr1 (153074256-153075303)
               

               
               1-980, gnl|Mm7|chr3 (88443726-88442849)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (0.526501)
               

               
               pty (0.142714)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               pty (0.142714)

	431-545, - strand, RNAz p=0.843984
	666-783, - strand, RNAz p=0.864654

	1-980, gnl\|bosTau2\|chr3 (10364768-10365752)
	1-980, gnl\|Hg17\|chr1 (153074256-153075303)
	1-980, gnl\|Mm7\|chr3 (88443726-88442849)