Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzb-l-21-0-UI.s1.3

Sequence:


               
               AGGGCATTCCATTAGCTCCGTGCACTGTAATGCAGGCCTCTGCTAGGGGATAACCCAGGC
TCAGGGTTAACAGCTAGTGCCCTGGCCGAGACATACCCAGAGAAGGGACATGGGGAGCTG
AGTAAACTCAACCACCTGGTCTCCTGCCACCAAGGCCCCTTATCCTATAGGTTCCCCCAA
TGTTGCTCTTGCATGGCAGTTTCTAATATGGAACTCTCCTCTATAGGATTTGATGTATGA
AAATCACTGAGGGGCATAGTCCTAAGGGGAGAAGGGAAGCTGCCTGGCTCCACAGGGTTA
CAGCCTTTCTGCTGTTCCCTAATTTTATTAGGATGTGGCTTGTTGGCCCCTGTGTTGCCA
TCATAGGGACATAAGTCTTTAAATATTTAACTTATTTATTTAAGTAGAAGGGGAATCAGT
TTCCAGCTCTGCTGGTGTCTAGGAGTTGGGTAGGATGAGATCCCTAACGACTAGGTCCCC
TGAGATGGTTGGTGACTGGGCCAGCATCTCCTTCTCCTGGAGTGATTGGTCCAACCCCCG
CGTTGCCTAATCCTGAGCTTGGAAGCTCTGCTCAGCCTAACTCATATCCCAAATCCTGTT
ACCCAAGGTGGGGAGGGCTGGGGAAAAGTGGCTGGTGGGGTTCCAGGTCTCAGCAGCCTT
CCTAGCCTCTCCCCCTCTCTTGGCCGAGCCGCCCCTCAACTCCCCTCTGCTCCCTCTAGG
ACTGGGCTGATGAAGGAGCTGCCCAGCCCCCACCTTTCCCCACTGGCAACCACAGCCCCT
CTCCTTGGGGCTGTTCTGACCAGAAGCACAGTGTGGCTCCTTGAGCCTTTCTCCGTCTCA
GCCCCCAGGGCATATCTGTACTTGGGGAATCTAGCACAGACACTCAGGAGCACACCCCCG
CCCCCCCCAAGGGAGGTCTTATCTCTGGGGGGGTTTAAGTGCCGTTTGCAATAATGTTAT
GTCTTATTTATTTAGTGGAGTAAATATTTTATACTGTATGTGAGCAATCAGAGTATAATG
TTTATGGTGATGGAAATTAAAGTCTTCTTATATGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCATTCCATTAGCTCCGTGCACTGTAATGCAGGCCTCTGCTAGGGGATAACCCAGGC
TCAGGGTTAACAGCTAGTGCCCTGGCCGAGACATACCCAGAGAAGGGACATGGGGAGCTG
AGTAAACTCAACCACCTGGTCTCCTGCCACCAAGGCCCCTTATCCTATAGGTTCCCCCAA
TGTTGCTCTTGCATGGCAGTTTCTAATATGGAACTCTCCTCTATAGGATTTGATGTATGA
AAATCACTGAGGGGCATAGTCCTAAGGGGAGAAGGGAAGCTGCCTGGCTCCACAGGGTTA
CAGCCTTTCTGCTGTTCCCTAATTTTATTAGGATGTGGCTTGTTGGCCCCTGTGTTGCCA
TCATAGGGACATAAGTCTTTAAATATTTAACTTATTTATTTAAGTAGAAGGGGAATCAGT
TTCCAGCTCTGCTGGTGTCTAGGAGTTGGGTAGGATGAGATCCCTAACGACTAGGTCCCC
TGAGATGGTTGGTGACTGGGCCAGCATCTCCTTCTCCTGGAGTGATTGGTCCAACCCCCG
CGTTGCCTAATCCTGAGCTTGGAAGCTCTGCTCAGCCTAACTCATATCCCAAATCCTGTT
ACCCAAGGTGGGGAGGGCTGGGGAAAAGTGGCTGGTGGGGTTCCAGGTCTCAGCAGCCTT
CCTAGCCTCTCCCCCTCTCTTGGCCGAGCCGCCCCTCAACTCCCCTCTGCTCCCTCTAGG
ACTGGGCTGATGAAGGAGCTGCCCAGCCCCCACCTTTCCCCACTGGCAACCACAGCCCCT
CTCCTTGGGGCTGTTCTGACCAGAAGCACAGTGTGGCTCCTTGAGCCTTTCTCCGTCTCA
GCCCCCAGGGCATATCTGTACTTGGGGAATCTAGCACAGACACTCAGGAGCACACCCCCG
CCCCCCCCAAGGGAGGTCTTATCTCTGGGGGGGTTTAAGTGCCGTTTGCAATAATGTTAT
GTCTTATTTATTTAGTGGAGTAAATATTTTATACTGTATGTGAGCAATCAGAGTATAATG
TTTATGGTGATGGAAATTAAAGTCTTCTTATATGTTAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               117-230, - strand, RNAz p=0.870107
               

               
               734-861, - strand, RNAz p=0.996732

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-230, - strand, RNAz p=0.870107
               

               
               734-861, - strand, RNAz p=0.996732

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               660-740, + strand, RNAmicro p=0.993443

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               660-740, + strand, RNAmicro p=0.993443

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr16 (2924063-2923014)
               

               
               1-1056, gnl|Hg17|chr1 (202359746-202358638)
               

               
               1-1056, gnl|Mm7|chr1 (131877427-131878427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr16 (2924063-2923014)
               

               
               1-1056, gnl|Hg17|chr1 (202359746-202358638)
               

               
               1-1056, gnl|Mm7|chr1 (131877427-131878427)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)

	117-230, - strand, RNAz p=0.870107
	734-861, - strand, RNAz p=0.996732

	1-1056, gnl\|bosTau2\|chr16 (2924063-2923014)
	1-1056, gnl\|Hg17\|chr1 (202359746-202358638)
	1-1056, gnl\|Mm7\|chr1 (131877427-131878427)