Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzb-l-23-0-UI.s1.3

Sequence:


               
               TTGCATACAAGTCGAACGTTTGTGCTTCCCGTGCATGCAGTCAAAGACTCGGCACAGGTT
TTAGAGGAAAGAGTCGAACATGAACTAGGAAGCTGGGCGATGCTCCTGTCTCCAGCTGAA
GAGCCAGGACTCCTCCCCCACATCCCCGACATCCCAGTGCAGGTGGGTGCCAGGAAGACG
CCGCCTCCCCACAGCCTGGATGGGATGTCCCCAAGCTCTTGTTCTCCTGACATCTCGACA
GGCGCACATTGAAGTGTATGAATATTTTTTAAAAGGTTTCACAGTAAAGATAGTCTTCCC
CTCTGCTTTCTCGAAAGCTTACCGACCCAGTGGCTCACGGGCCGGGGCTAGATTTACTCT
TCCACGGGCTGCCGCTTTTCCAGGCACCTCGAAGCATCAGGGCGGGGAATCAAAGCAGAT
GTGGGCAGGGACGAGCATTGCTTACCTAGCCCTGCCAGGGCAGAGTTTCCCAAAACTGGG
TTAATTTCTTTATAGAAATGTGAACACTGAGTTTATTTTAAGAAAATAATAAAAATCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATACAAGTCGAACGTTTGTGCTTCCCGTGCATGCAGTCAAAGACTCGGCACAGGTT
TTAGAGGAAAGAGTCGAACATGAACTAGGAAGCTGGGCGATGCTCCTGTCTCCAGCTGAA
GAGCCAGGACTCCTCCCCCACATCCCCGACATCCCAGTGCAGGTGGGTGCCAGGAAGACG
CCGCCTCCCCACAGCCTGGATGGGATGTCCCCAAGCTCTTGTTCTCCTGACATCTCGACA
GGCGCACATTGAAGTGTATGAATATTTTTTAAAAGGTTTCACAGTAAAGATAGTCTTCCC
CTCTGCTTTCTCGAAAGCTTACCGACCCAGTGGCTCACGGGCCGGGGCTAGATTTACTCT
TCCACGGGCTGCCGCTTTTCCAGGCACCTCGAAGCATCAGGGCGGGGAATCAAAGCAGAT
GTGGGCAGGGACGAGCATTGCTTACCTAGCCCTGCCAGGGCAGAGTTTCCCAAAACTGGG
TTAATTTCTTTATAGAAATGTGAACACTGAGTTTATTTTAAGAAAATAATAAAAATCATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-220, - strand, RNAz p=0.99149

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-220, - strand, RNAz p=0.99149

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-535, gnl|bosTau2|chr17 (26437260-26437816)
               

               
               1-535, gnl|canFam2|chr26 (9187806-9188899)
               

               
               1-535, gnl|dasNov1|scaffold_2049 (79955-78938)
               

               
               1-535, gnl|echTel1|scaffold_318156 (116525-115462)
               

               
               1-535, gnl|Hg17|chr12 (122417377-122417910)
               

               
               1-535, gnl|hg17|chr2 (91356559-91357553)
               

               
               1-535, gnl|mm7|chr5 (123707860-123706879)
               

               
               1-535, gnl|Mm7|chr5 (123706842-123707376)
               

               
               1-535, gnl|monDom2|scaffold_97 (3923837-3922839)
               

               
               1-535, gnl|oryCun1|scaffold_68869 (10674-11550)
               

               
               1-535, gnl|panTro1|chr1 (116696918-116695917)
               

               
               1-535, gnl|rheMac2|chr11 (124689148-124688130)
               

               
               1-535, gnl|rn3|chr2 (147342717-147341737)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-535, gnl|bosTau2|chr17 (26437260-26437816)
               

               
               1-535, gnl|canFam2|chr26 (9187806-9188899)
               

               
               1-535, gnl|dasNov1|scaffold_2049 (79955-78938)
               

               
               1-535, gnl|echTel1|scaffold_318156 (116525-115462)
               

               
               1-535, gnl|Hg17|chr12 (122417377-122417910)
               

               
               1-535, gnl|hg17|chr2 (91356559-91357553)
               

               
               1-535, gnl|mm7|chr5 (123707860-123706879)
               

               
               1-535, gnl|Mm7|chr5 (123706842-123707376)
               

               
               1-535, gnl|monDom2|scaffold_97 (3923837-3922839)
               

               
               1-535, gnl|oryCun1|scaffold_68869 (10674-11550)
               

               
               1-535, gnl|panTro1|chr1 (116696918-116695917)
               

               
               1-535, gnl|rheMac2|chr11 (124689148-124688130)
               

               
               1-535, gnl|rn3|chr2 (147342717-147341737)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               ill (0.175593)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               nmm (0.132802)

	1-535, gnl\|bosTau2\|chr17 (26437260-26437816)
	1-535, gnl\|canFam2\|chr26 (9187806-9188899)
	1-535, gnl\|dasNov1\|scaffold_2049 (79955-78938)
	1-535, gnl\|echTel1\|scaffold_318156 (116525-115462)
	1-535, gnl\|Hg17\|chr12 (122417377-122417910)
	1-535, gnl\|hg17\|chr2 (91356559-91357553)
	1-535, gnl\|mm7\|chr5 (123707860-123706879)
	1-535, gnl\|Mm7\|chr5 (123706842-123707376)
	1-535, gnl\|monDom2\|scaffold_97 (3923837-3922839)
	1-535, gnl\|oryCun1\|scaffold_68869 (10674-11550)
	1-535, gnl\|panTro1\|chr1 (116696918-116695917)
	1-535, gnl\|rheMac2\|chr11 (124689148-124688130)
	1-535, gnl\|rn3\|chr2 (147342717-147341737)