Ss1.1-mCP1-MI-P-CP1-nzb-o-12-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCTGTGATGTCCTAACGTAGCACACCTTTTACAGCCAGCGAATCCAGGTTTACAGTT TACAGGGTTTGTGTGCTTCCCTGGGCCGTATTAACAGTAGATTTTTGAAGGAAGTAATGT TTTTCCCTTTGAACTAGAGGAATGAGGTGGCTTTGAAAATGTGGTTTGAAACACTGTCGT GCAGCTTCTCTCATGTCCACTCTGTGGTCCTGTGTGAGAGTTAAGGGGTCTCACTTATCA GCCGAGAAACATCACATCACTGATAGTTTGCATAGATCATAAAGGCGTCGTAACTGCCAA ATGACTGCCTTCAGAAGTCACTTCTTAGGGACTTTTCTATATTCGGGTCAGAGGATTTGC GTGTAACTGATCAACAACTGAGCGAACTTTGTTTCCCCTTAACCTGCGCGGGGCTCTTGC GGTGTCCTCCTGTTTCCAGTCCTTTCTGCTCGGCACCGTCATCCTCCTCACGGCACCGTA AGCACCTGCTCGTTTCTCTTCTTCGTTTAATTGTTACCATAAGCACCTTTTGCTAACTTT TCAGCTAAAGCCCTTCACTTTGGCTGCCTTTGCTTTCGTTCTCGGGTGGCCAGCATTGGC CAGGTTCTGAAAAGCCCTCGACTGAGTCTGCTCGTACGTGTGGATGACCCCTCGGCGGGA CCCACACGTTCCCTGGAACTCGGGGAACGGCGCCTCTTTGGTGTGTGGGCTGTGTTGATG AGGGCTGTCAGCTCTGGGGAGAAGCGCTCACAGCGAAGCCCTGTCGAATGTGTTGGTACT GTCCTCATTCCTTCAGAGGCTTGAACGCTGGCAGGGGTATCTAAGGAAGAGCGAGTTGAA TTTCAGGTCTTGCCATTGCCATTAACAACAGGTTAGACAACCGGGCACAGACTCACTTGA ATGTTCAGTACCTGAGGCGTCTGACCACGGTCACTGTGCCAAACCAAAGAGCAGCTGCAG CTCAGTGGTCACTAAACATTCACTGCTTACCGAGTTTAGCTTTGTCTTTGCATGTGGGTG ATTTTTTTTTTTTAATCCTTATACATATTTAGTGGTGATGATCCAGTGTATCATAAGTTA ATTTAACTCTAAGTTCAGTTTAAATCAAATAGGCAGTGTTTACTTGAATTTTATTTCTAT TAGAAAGCAGATTTTGACTGTAGGATTGTTTAAATTACAGGTTTTCAGCTATGTCATCTC TAAAGCAGATGCATATTAAAGGGCTAAGTATTAGGATCTGCATAATTGGGGCACTGAAAA GACAAATGACTTACAAATATGTTTTGCTAATATTTTGTTCTAGGACTAGTACCGCTGTCA GTGGAAAGTATTTTTAACTAATCTATTATTGAGAAATTAATTCTATTTTTGCACTTCAGC CCAAATAAAGACCATATCTAATATTCTGTAAGATACAGCTAGTGTGTAAACCTGAAATTC ATGTGTTTCATATGATCTGAACTGTATTTTCCAGCTTAAATTAAAAATGCCGTATAGATT CAGAAAGTTTCGTATTTTTCTAATGACTTCACTTTATATTATTTTGTTGCATTGCATAAA GAAGTAAGGAATTGTATTTGTATTAAAAGCTTCTGAAAGGTATTAGTTGAGTCTGTTGTA TTTGTACACAATTGCAGATGGGTCTATGCCTCTTAAAGGAAAGACGGACACTATTTTAAA GTGATCTTTAATATGTTTTTATATAAACAAATTTGAAAGAGTTTGGTTGTCTTCACTTAC CCAGTCCCACAGTAAGTCTTGTTTTTGTCTAAGTGTAACCCTGGACCATGACTTCATGTT ACCTTTGCTTTGTCGTTTGGGTGGCTAACCTACATTAACATGAAGGCTGAACATTTTTAA ACGTTTTTTTTTTTTTTTTCAAAAATCGTAATAGTGATTTACTTGATTAATAAATAAAGT CCTGTATTTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCTGTGATGTCCTAACGTAGCACACCTTTTACAGCCAGCGAATCCAGGTTTACAGTT TACAGGGTTTGTGTGCTTCCCTGGGCCGTATTAACAGTAGATTTTTGAAGGAAGTAATGT TTTTCCCTTTGAACTAGAGGAATGAGGTGGCTTTGAAAATGTGGTTTGAAACACTGTCGT GCAGCTTCTCTCATGTCCACTCTGTGGTCCTGTGTGAGAGTTAAGGGGTCTCACTTATCA GCCGAGAAACATCACATCACTGATAGTTTGCATAGATCATAAAGGCGTCGTAACTGCCAA ATGACTGCCTTCAGAAGTCACTTCTTAGGGACTTTTCTATATTCGGGTCAGAGGATTTGC GTGTAACTGATCAACAACTGAGCGAACTTTGTTTCCCCTTAACCTGCGCGGGGCTCTTGC GGTGTCCTCCTGTTTCCAGTCCTTTCTGCTCGGCACCGTCATCCTCCTCACGGCACCGTA AGCACCTGCTCGTTTCTCTTCTTCGTTTAATTGTTACCATAAGCACCTTTTGCTAACTTT TCAGCTAAAGCCCTTCACTTTGGCTGCCTTTGCTTTCGTTCTCGGGTGGCCAGCATTGGC CAGGTTCTGAAAAGCCCTCGACTGAGTCTGCTCGTACGTGTGGATGACCCCTCGGCGGGA CCCACACGTTCCCTGGAACTCGGGGAACGGCGCCTCTTTGGTGTGTGGGCTGTGTTGATG AGGGCTGTCAGCTCTGGGGAGAAGCGCTCACAGCGAAGCCCTGTCGAATGTGTTGGTACT GTCCTCATTCCTTCAGAGGCTTGAACGCTGGCAGGGGTATCTAAGGAAGAGCGAGTTGAA TTTCAGGTCTTGCCATTGCCATTAACAACAGGTTAGACAACCGGGCACAGACTCACTTGA ATGTTCAGTACCTGAGGCGTCTGACCACGGTCACTGTGCCAAACCAAAGAGCAGCTGCAG CTCAGTGGTCACTAAACATTCACTGCTTACCGAGTTTAGCTTTGTCTTTGCATGTGGGTG ATTTTTTTTTTTTAATCCTTATACATATTTAGTGGTGATGATCCAGTGTATCATAAGTTA ATTTAACTCTAAGTTCAGTTTAAATCAAATAGGCAGTGTTTACTTGAATTTTATTTCTAT TAGAAAGCAGATTTTGACTGTAGGATTGTTTAAATTACAGGTTTTCAGCTATGTCATCTC TAAAGCAGATGCATATTAAAGGGCTAAGTATTAGGATCTGCATAATTGGGGCACTGAAAA GACAAATGACTTACAAATATGTTTTGCTAATATTTTGTTCTAGGACTAGTACCGCTGTCA GTGGAAAGTATTTTTAACTAATCTATTATTGAGAAATTAATTCTATTTTTGCACTTCAGC CCAAATAAAGACCATATCTAATATTCTGTAAGATACAGCTAGTGTGTAAACCTGAAATTC ATGTGTTTCATATGATCTGAACTGTATTTTCCAGCTTAAATTAAAAATGCCGTATAGATT CAGAAAGTTTCGTATTTTTCTAATGACTTCACTTTATATTATTTTGTTGCATTGCATAAA GAAGTAAGGAATTGTATTTGTATTAAAAGCTTCTGAAAGGTATTAGTTGAGTCTGTTGTA TTTGTACACAATTGCAGATGGGTCTATGCCTCTTAAAGGAAAGACGGACACTATTTTAAA GTGATCTTTAATATGTTTTTATATAAACAAATTTGAAAGAGTTTGGTTGTCTTCACTTAC CCAGTCCCACAGTAAGTCTTGTTTTTGTCTAAGTGTAACCCTGGACCATGACTTCATGTT ACCTTTGCTTTGTCGTTTGGGTGGCTAACCTACATTAACATGAAGGCTGAACATTTTTAA ACGTTTTTTTTTTTTTTTTCAAAAATCGTAATAGTGATTTACTTGATTAATAAATAAAGT CCTGTATTTGAA |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-189, gnl|bosTau2|chr12 (21144264-21144450) | |
| 1-189, gnl|canFam2|chr25 (19939954-19939818) | |
| 1-189, gnl|canFam2|chr25 (19939790-19939922) | |
| 1-189, gnl|canFam2|chr25 (19939962-19939736) | |
| 1-189, gnl|dasNov1|scaffold_10115 (76285-76069) | |
| 1-189, gnl|dasNov1|scaffold_10115 (76134-76253) | |
| 1-189, gnl|dasNov1|scaffold_10115 (76293-76060) | |
| 1-189, gnl|echTel1|scaffold_297238 (645-778) | |
| 1-189, gnl|echTel1|scaffold_297238 (788-587) | |
| 1-189, gnl|hg17|chr1 (191057000-191057233) | |
| 1-189, gnl|hg17|chr13 (68460137-68460269) | |
| 1-189, gnl|hg17|chr13 (20846739-20846988) | |
| 1-189, gnl|Hg17|chr13 (68460110-68460302) | |
| 1-189, gnl|loxAfr1|scaffold_14639 (4291-4504) | |
| 1-189, gnl|loxAfr1|scaffold_14639 (4438-4306) | |
| 1-189, gnl|loxAfr1|scaffold_14639 (4283-4506) | |
| 1-189, gnl|mm7|chr14 (52702478-52702704) | |
| 1-189, gnl|mm7|chr14 (52702634-52702512) | |
| 1-189, gnl|mm7|chr14 (52702474-52702691) | |
| 1-189, gnl|Mm7|chr14 (52702660-52702478) | |
| 1-189, gnl|oryCun1|scaffold_204946 (49043-49255) | |
| 1-189, gnl|oryCun1|scaffold_204946 (49204-49075) | |
| 1-189, gnl|oryCun1|scaffold_204946 (49035-49273) | |
| 1-189, gnl|panTro1|chr1 (173566452-173566685) | |
| 1-189, gnl|panTro1|chr14 (50875822-50875954) | |
| 1-189, gnl|panTro1|chr14 (20008719-20008968) | |
| 1-189, gnl|rheMac2|chr1 (176330628-176330860) | |
| 1-189, gnl|rheMac2|chr17 (49263321-49263454) | |
| 1-189, gnl|rheMac2|chr17 (2003385-2003633) | |
| 1-189, gnl|rn3|chr15 (36893724-36893950) | |
| 1-189, gnl|rn3|chr15 (36893887-36893758) | |
| 1-189, gnl|rn3|chr15 (36893716-36893922) | |
| 520-1932, gnl|bosTau2|chr12 (21144784-21146178) | |
| 520-1932, gnl|Hg17|chr13 (68460950-68462343) | |
| 520-1932, gnl|Mm7|chr14 (52702049-52700680) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-189, gnl|bosTau2|chr12 (21144264-21144450) | |
| 1-189, gnl|canFam2|chr25 (19939954-19939818) | |
| 1-189, gnl|canFam2|chr25 (19939790-19939922) | |
| 1-189, gnl|canFam2|chr25 (19939962-19939736) | |
| 1-189, gnl|dasNov1|scaffold_10115 (76285-76069) | |
| 1-189, gnl|dasNov1|scaffold_10115 (76134-76253) | |
| 1-189, gnl|dasNov1|scaffold_10115 (76293-76060) | |
| 1-189, gnl|echTel1|scaffold_297238 (645-778) | |
| 1-189, gnl|echTel1|scaffold_297238 (788-587) | |
| 1-189, gnl|hg17|chr1 (191057000-191057233) | |
| 1-189, gnl|hg17|chr13 (68460137-68460269) | |
| 1-189, gnl|hg17|chr13 (20846739-20846988) | |
| 1-189, gnl|Hg17|chr13 (68460110-68460302) | |
| 1-189, gnl|loxAfr1|scaffold_14639 (4291-4504) | |
| 1-189, gnl|loxAfr1|scaffold_14639 (4438-4306) | |
| 1-189, gnl|loxAfr1|scaffold_14639 (4283-4506) | |
| 1-189, gnl|mm7|chr14 (52702478-52702704) | |
| 1-189, gnl|mm7|chr14 (52702634-52702512) | |
| 1-189, gnl|mm7|chr14 (52702474-52702691) | |
| 1-189, gnl|Mm7|chr14 (52702660-52702478) | |
| 1-189, gnl|oryCun1|scaffold_204946 (49043-49255) | |
| 1-189, gnl|oryCun1|scaffold_204946 (49204-49075) | |
| 1-189, gnl|oryCun1|scaffold_204946 (49035-49273) | |
| 1-189, gnl|panTro1|chr1 (173566452-173566685) | |
| 1-189, gnl|panTro1|chr14 (50875822-50875954) | |
| 1-189, gnl|panTro1|chr14 (20008719-20008968) | |
| 1-189, gnl|rheMac2|chr1 (176330628-176330860) | |
| 1-189, gnl|rheMac2|chr17 (49263321-49263454) | |
| 1-189, gnl|rheMac2|chr17 (2003385-2003633) | |
| 1-189, gnl|rn3|chr15 (36893724-36893950) | |
| 1-189, gnl|rn3|chr15 (36893887-36893758) | |
| 1-189, gnl|rn3|chr15 (36893716-36893922) | |
| 520-1932, gnl|bosTau2|chr12 (21144784-21146178) | |
| 520-1932, gnl|Hg17|chr13 (68460950-68462343) | |
| 520-1932, gnl|Mm7|chr14 (52702049-52700680) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| liv (0.731422) | |
| mgp (0.692042) | |
| lyg (0.665513) | |
| bfe (0.599431) | |
| rec (0.519211) | |
| pro (0.512033) | |
| cty (0.41632) | |
| tra (0.369276) | |
| ova (0.258264) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| mga (0.160205) | |
| fco (0.157208) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.731422) | |
| mgp (0.692042) | |
| lyg (0.665513) | |
| bfe (0.599431) | |
| rec (0.519211) | |
| pro (0.512033) | |
| cty (0.41632) | |
| tra (0.369276) | |
| ova (0.258264) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| mga (0.160205) | |
| fco (0.157208) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| spc (0.113366) | |
| nbm (0.0993246) |