Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-a-04-0-UI.s1.3

Sequence:


               
               TTTTATATTCTCAAACTTGTACATTCTTTCCCTTTTCTCTTTTTTTTTTTTTTTTTTTTT
GGTGGGCTGAGGAAGGGGCAGGCAGAATGAAGCTGGCCACTGAAAACTGTAAGACGGTCA
AAAGCTGACAGCCTGTGTTTGTGAAAAGGGAATTGTAAATGGACAATTTAATGTACACTG
AAATTTGAAGACAATTACTGTATCTAAAAGGAGCTGCTATGAAGTACTTTTCTTACGTTG
CTAGGCTACTGTTTCTGCAAGCCCTGGATCTCTTTGCAGGGGTCTGTGATCAGGACCCTT
GTACCAAAAACGGTCTGGATAGACCTTTTTTTAAGGATCTTGGCTGCTTTTTACTAGAAG
GTTGCTTTTATGAGCGTATTTATACTACGGAAGGATGAGTGTTAATTTTAACCAACTTTG
CCATTTTGTAGCAAAAAGTTAAAGACCTTCACATTATAAATTCCAAATCTTTCCACCTGT
TACGCATGCATATTTAATATCCATTTGGATAGCCAGAAATAGAATCATGAAGGTAAAATA
TGAGTTGTCACTTTGTTTCTTAAGAACTGTCATTTTATTTGTAATATATATGTAAAGGGC
CATTCTTAAGTTTTCTCCTTAAACTTACTGCTGTCACGTGTTAGCTGCGTGCATGTATAA
ACCTGTTCCACATCAGAAACATAGTCAAAGTTTTATCTATGTAACTTATTCACTCTGTAA
ATACATTCAAAGTTTTTGTGATGTAATCTCGGTTGATATTCTGTTTAGACCGTCCTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATATTCTCAAACTTGTACATTCTTTCCCTTTTCTCTTTTTTTTTTTTTTTTTTTTT
GGTGGGCTGAGGAAGGGGCAGGCAGAATGAAGCTGGCCACTGAAAACTGTAAGACGGTCA
AAAGCTGACAGCCTGTGTTTGTGAAAAGGGAATTGTAAATGGACAATTTAATGTACACTG
AAATTTGAAGACAATTACTGTATCTAAAAGGAGCTGCTATGAAGTACTTTTCTTACGTTG
CTAGGCTACTGTTTCTGCAAGCCCTGGATCTCTTTGCAGGGGTCTGTGATCAGGACCCTT
GTACCAAAAACGGTCTGGATAGACCTTTTTTTAAGGATCTTGGCTGCTTTTTACTAGAAG
GTTGCTTTTATGAGCGTATTTATACTACGGAAGGATGAGTGTTAATTTTAACCAACTTTG
CCATTTTGTAGCAAAAAGTTAAAGACCTTCACATTATAAATTCCAAATCTTTCCACCTGT
TACGCATGCATATTTAATATCCATTTGGATAGCCAGAAATAGAATCATGAAGGTAAAATA
TGAGTTGTCACTTTGTTTCTTAAGAACTGTCATTTTATTTGTAATATATATGTAAAGGGC
CATTCTTAAGTTTTCTCCTTAAACTTACTGCTGTCACGTGTTAGCTGCGTGCATGTATAA
ACCTGTTCCACATCAGAAACATAGTCAAAGTTTTATCTATGTAACTTATTCACTCTGTAA
ATACATTCAAAGTTTTTGTGATGTAATCTCGGTTGATATTCTGTTTAGACCGTCCTTTAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               253-372, - strand, RNAz p=0.983582

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-372, - strand, RNAz p=0.983582

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-779, gnl|bosTau2|chr12 (15959911-15959125)
               

               
               1-779, gnl|Hg17|chr13 (31767979-31768746)
               

               
               1-779, gnl|Mm7|chr5 (149429893-149430762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-779, gnl|bosTau2|chr12 (15959911-15959125)
               

               
               1-779, gnl|Hg17|chr13 (31767979-31768746)
               

               
               1-779, gnl|Mm7|chr5 (149429893-149430762)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbe (0.478469)
               

               
               liv (0.292569)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               liv (0.292569)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

	1-779, gnl\|bosTau2\|chr12 (15959911-15959125)
	1-779, gnl\|Hg17\|chr13 (31767979-31768746)
	1-779, gnl\|Mm7\|chr5 (149429893-149430762)

	cbe (0.478469)
	liv (0.292569)
	ece (0.229305)
	hea (0.204499)
	nep (0.183925)
	sag (0.182715)
	fbs (0.175346)
	eye (0.170503)
	fco (0.157208)
	lin (0.145603)
	ste (0.135208)
	bla (0.124347)
	eep (0.122564)