Ss1.1-mCP1-MI-P-CP1-nzc-b-08-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCGACGCGCCCGGAGCTGCCGGTCTCTCGAGAGCTCCCACCCCTGCCTGGCCGCTCACT CGCCGCCGCCGCCGCCGCCGCCGCCGCCATGCCCTTCTCCAACAGCCACAACACGCTGAA GCTGCGCTTCCCGGCTGAGGACGAGTTCCCCGACCTCAGCGGCCACAACAACCACATGGC CAAGGTGCTGACCCCCGAGCTGTATGCCGAGCTGCGCGCTAAGAGCACGCCCAGCGGCTT CACGTTGGACGACGTCATCCAGACCGGCGTGGACAACCCAGGCCACCCCTATATCATGAC TGTGGGCTGCGTTGCTGGCGACGAGGAGTCGTATGACGTGTTCAAGGAACTCTTTGACCC CATCATTGAGGACCGGCACGGCGGCTACAAGCCTAGCGATGAGCACAAGACCGATCTCAA CCCAGACAACCTTCAGGGCGGCGACGACCTGGACCCCAACTACGTGCTGAGCTCGCGGGT GCGCACGGGCCGCAGCATCCGCGGCTTCTGTCTACCCCCGCACTGCAGCCGCGGGGAGCG CCGCGCCATCGAGAAGCTCGCTGTCGAAGCCCTGTCGAGCCTGGACGGTGACCTGGCGGG GAGGTACTACGCGCTCAAAAGCATGACCGAGGCGGAACAGCAGCAGCTCATCGACGACCA CTTCCTTTTCGACAAGCCCGTGTCGCCCCTGCTGCTGGCCTCGGGCATGGCCCGCGACTG GCCCGATGCCCGCGGCATCTGGCACAATGACAATAAGACCTTCCTGGTGTGGATCAACGA GGAGGACCACCTGCGGGTCATCTCCATGCAGAAGGGGGGCAACATGAAGGAGGTGTTCAC CCGCTTCTGCAATGGCCTCACTCAGATCGAAACCCTCTTCAAGTCCAAGAACTACGAGTT CATGTGGAACCCTCACCTGGGCTACATCCTGACCTGCCCATCCAACCTGGGCACGGGGCT GCGGGCAGGTGTGCACATCAAGTTGCCCCACCTGGGCAAGCACGAGAAGTTCCCCGAGGT GCTCAAGCGGCTGCGGCTCCAGAAGCGAGGCACAGGCGGTGTGGACACCGCCGCTGTGGG CGGGGTCTTCGATGTCTCCAATGCTGACCGCCTGGGCTTCTCCGAGGTGGAGCTGGTGCA GATGGTGGTGGACGGGGTGAAGCTGCTCATCGAGATGGAGCAGCGGCTGGAGCAGGGCCA GGCCATTGATGACCTCGTGCCCGCCCAGAAGTGAAGCCCTGGCCTGCACCTGCTGCCACC ACCAGCCCCGCTGCTTCCTAATTTATTGCCCGGGCAGTGCCCACCATGCACCCCTGAGGC TCACCCTTTGGTGGCTGAGTCCTTAGCCTCGCTGTAGAGACTTCTCCTGCCGCCCTCAGT AGAGTTTATTTTTGTGATGGCTAAGATGTTGCTGATGCTGAAATAAACAGGTTTTGGCCT GCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCGACGCGCCCGGAGCTGCCGGTCTCTCGAGAGCTCCCACCCCTGCCTGGCCGCTCACT CGCCGCCGCCGCCGCCGCCGCCGCCGCCATGCCCTTCTCCAACAGCCACAACACGCTGAA GCTGCGCTTCCCGGCTGAGGACGAGTTCCCCGACCTCAGCGGCCACAACAACCACATGGC CAAGGTGCTGACCCCCGAGCTGTATGCCGAGCTGCGCGCTAAGAGCACGCCCAGCGGCTT CACGTTGGACGACGTCATCCAGACCGGCGTGGACAACCCAGGCCACCCCTATATCATGAC TGTGGGCTGCGTTGCTGGCGACGAGGAGTCGTATGACGTGTTCAAGGAACTCTTTGACCC CATCATTGAGGACCGGCACGGCGGCTACAAGCCTAGCGATGAGCACAAGACCGATCTCAA CCCAGACAACCTTCAGGGCGGCGACGACCTGGACCCCAACTACGTGCTGAGCTCGCGGGT GCGCACGGGCCGCAGCATCCGCGGCTTCTGTCTACCCCCGCACTGCAGCCGCGGGGAGCG CCGCGCCATCGAGAAGCTCGCTGTCGAAGCCCTGTCGAGCCTGGACGGTGACCTGGCGGG GAGGTACTACGCGCTCAAAAGCATGACCGAGGCGGAACAGCAGCAGCTCATCGACGACCA CTTCCTTTTCGACAAGCCCGTGTCGCCCCTGCTGCTGGCCTCGGGCATGGCCCGCGACTG GCCCGATGCCCGCGGCATCTGGCACAATGACAATAAGACCTTCCTGGTGTGGATCAACGA GGAGGACCACCTGCGGGTCATCTCCATGCAGAAGGGGGGCAACATGAAGGAGGTGTTCAC CCGCTTCTGCAATGGCCTCACTCAGATCGAAACCCTCTTCAAGTCCAAGAACTACGAGTT CATGTGGAACCCTCACCTGGGCTACATCCTGACCTGCCCATCCAACCTGGGCACGGGGCT GCGGGCAGGTGTGCACATCAAGTTGCCCCACCTGGGCAAGCACGAGAAGTTCCCCGAGGT GCTCAAGCGGCTGCGGCTCCAGAAGCGAGGCACAGGCGGTGTGGACACCGCCGCTGTGGG CGGGGTCTTCGATGTCTCCAATGCTGACCGCCTGGGCTTCTCCGAGGTGGAGCTGGTGCA GATGGTGGTGGACGGGGTGAAGCTGCTCATCGAGATGGAGCAGCGGCTGGAGCAGGGCCA GGCCATTGATGACCTCGTGCCCGCCCAGAAGTGAAGCCCTGGCCTGCACCTGCTGCCACC ACCAGCCCCGCTGCTTCCTAATTTATTGCCCGGGCAGTGCCCACCATGCACCCCTGAGGC TCACCCTTTGGTGGCTGAGTCCTTAGCCTCGCTGTAGAGACTTCTCCTGCCGCCCTCAGT AGAGTTTATTTTTGTGATGGCTAAGATGTTGCTGATGCTGAAATAAACAGGTTTTGGCCT GCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 625-742, - strand, RNAz p=0.693695 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 625-742, - strand, RNAz p=0.693695 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 68-282, gnl|bosTau2|chr18 (38536441-38536655) | |
| 68-282, gnl|Hg17|chr19 (50514829-50514618) | |
| 68-282, gnl|Mm7|chr7 (17096494-17096705) | |
| 568-742, gnl|bosTau2|chr18 (38541252-38541426) | |
| 568-742, gnl|Hg17|chr19 (50507020-50506846) | |
| 568-742, gnl|Mm7|chr7 (17099092-17099265) | |
| 896-999, gnl|bosTau2|chr21 (34434629-34434732) | |
| 896-999, gnl|canFam2|chr30 (13435985-13436152) | |
| 896-999, gnl|danRer3|chrUn (42212025-42212186) | |
| 896-999, gnl|dasNov1|scaffold_5858 (70482-70360) | |
| 896-999, gnl|echTel1|scaffold_322287 (297481-297648) | |
| 896-999, gnl|fr1|chrUn (252312162-252312018) | |
| 896-999, gnl|galGal2|chr10 (20691474-20691310) | |
| 896-999, gnl|hg17|chr15 (41677667-41677834) | |
| 896-999, gnl|Hg17|chr15 (41677713-41677816) | |
| 896-999, gnl|loxAfr1|scaffold_22371 (14326-14159) | |
| 896-999, gnl|mm7|chr2 (121103508-121103675) | |
| 896-999, gnl|Mm7|chr2 (121103554-121103657) | |
| 896-999, gnl|monDom2|scaffold_53 (10398176-10398010) | |
| 896-999, gnl|oryCun1|scaffold_181039 (34093-33926) | |
| 896-999, gnl|panTro1|chr16 (41681304-41681471) | |
| 896-999, gnl|rheMac2|chr7 (22042097-22042264) | |
| 896-999, gnl|rn3|chr3 (108062969-108063136) | |
| 896-999, gnl|tetNig1|chrUn_random (25828302-25828456) | |
| 896-999, gnl|xenTro1|scaffold_358 (826693-826532) | |
| 1053-1232, gnl|bosTau2|chr18 (38543906-38544085) | |
| 1053-1232, gnl|Hg17|chr19 (50502029-50501850) | |
| 1053-1232, gnl|Mm7|chr7 (17103577-17103758) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-282, gnl|bosTau2|chr18 (38536441-38536655) | |
| 68-282, gnl|Hg17|chr19 (50514829-50514618) | |
| 68-282, gnl|Mm7|chr7 (17096494-17096705) | |
| 568-742, gnl|bosTau2|chr18 (38541252-38541426) | |
| 568-742, gnl|Hg17|chr19 (50507020-50506846) | |
| 568-742, gnl|Mm7|chr7 (17099092-17099265) | |
| 896-999, gnl|bosTau2|chr21 (34434629-34434732) | |
| 896-999, gnl|canFam2|chr30 (13435985-13436152) | |
| 896-999, gnl|danRer3|chrUn (42212025-42212186) | |
| 896-999, gnl|dasNov1|scaffold_5858 (70482-70360) | |
| 896-999, gnl|echTel1|scaffold_322287 (297481-297648) | |
| 896-999, gnl|fr1|chrUn (252312162-252312018) | |
| 896-999, gnl|galGal2|chr10 (20691474-20691310) | |
| 896-999, gnl|hg17|chr15 (41677667-41677834) | |
| 896-999, gnl|Hg17|chr15 (41677713-41677816) | |
| 896-999, gnl|loxAfr1|scaffold_22371 (14326-14159) | |
| 896-999, gnl|mm7|chr2 (121103508-121103675) | |
| 896-999, gnl|Mm7|chr2 (121103554-121103657) | |
| 896-999, gnl|monDom2|scaffold_53 (10398176-10398010) | |
| 896-999, gnl|oryCun1|scaffold_181039 (34093-33926) | |
| 896-999, gnl|panTro1|chr16 (41681304-41681471) | |
| 896-999, gnl|rheMac2|chr7 (22042097-22042264) | |
| 896-999, gnl|rn3|chr3 (108062969-108063136) | |
| 896-999, gnl|tetNig1|chrUn_random (25828302-25828456) | |
| 896-999, gnl|xenTro1|scaffold_358 (826693-826532) | |
| 1053-1232, gnl|bosTau2|chr18 (38543906-38544085) | |
| 1053-1232, gnl|Hg17|chr19 (50502029-50501850) | |
| 1053-1232, gnl|Mm7|chr7 (17103577-17103758) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| fhi (2.03493) | |
| eye (1.87553) | |
| fcc (1.78006) | |
| hyp (1.42837) | |
| fce (1.35796) | |
| fbs (1.22742) | |
| ece (0.917221) | |
| jej (0.692452) | |
| ecc (0.690211) | |
| cga (0.558191) | |
| duo (0.518403) | |
| cbr (0.511902) | |
| nje (0.49776) | |
| eje (0.494169) | |
| nco (0.485201) | |
| fli (0.405762) | |
| nbm (0.397298) | |
| ill (0.351185) | |
| pty (0.285429) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| med (0.232504) | |
| cbl (0.229595) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cut (0.169924) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (2.03493) | |
| eye (1.87553) | |
| fcc (1.78006) | |
| hyp (1.42837) | |
| fce (1.35796) | |
| fbs (1.22742) | |
| ece (0.917221) | |
| jej (0.692452) | |
| ecc (0.690211) | |
| cga (0.558191) | |
| duo (0.518403) | |
| cbr (0.511902) | |
| nje (0.49776) | |
| eje (0.494169) | |
| nco (0.485201) | |
| fli (0.405762) | |
| nbm (0.397298) | |
| ill (0.351185) | |
| pty (0.285429) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| ebs (0.236602) | |
| med (0.232504) | |
| cbl (0.229595) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cut (0.169924) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) |