Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-b-11-0-UI.s1.3

Sequence:


               
               CCATGAGCCCCAAGTCTTTGCCCAGAGGGCGACCTGCGCCGGGCTCACTTGACCCGTGGC
CTGCACCACCTGCTCTTGCTTCTCACCATCTCCGTCTTCCTGGGGCTGGGCCAGCCCAGG
AACCCCAAAGGCAAGCGGAAGGGGCAAGGGCGGCCTGGGACCCTGGCCCCTGGACCTCAG
CAGGTGCCGCTGGACCTGGTGTCCAGGGCAAAGCCGTTTGCCCGCATGGAGGAATACGAG
AAGAACCTTGGGGACATGGTGGCCCAGCTGAGGAACAGCTCTGAACTGGCCAAGAGGAAG
TGTGAGGTCAACCTGCAGCTCTGGCTGTCCAACCAGAGGAGCCTGTCACCCTGGGGCTAC
AGCATCAACCACGACCCCAGCCGCATCCCCGCGGACCTGCCGGAGGCGCGGTGCCTGTGT
CTGGGCTGTGTGAACCCCTTCACCATGCAGGAGGACCGCAGCATGGTGAGCGTGCCCGTG
TTCAGCCAGGTGCCCGTGCGCCGCCGCCTCTGCCCCCTGCCGCCGCGCACCGGGCCCTGC
CGCCAGCGCGCGGTCATGGAGACCATCGCCGTGGGCTGCACCTGCATCTTCTGAGACGCC
CTCCCCGCGCCCCCAGCCGCGAGCCAGGCAGCGGCGGGTGAAGCGAGACCTCGGGTCTGC
TCCTGGGGCTCCGAAGCCAAAAGCCGTGGGAGGTCGATTCCGGCAGAGACGAAGGAGGAC
CCGTCACCCGGAGGCCTCCACCGCGGAGACAGCGTATTAAACGTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGAGCCCCAAGTCTTTGCCCAGAGGGCGACCTGCGCCGGGCTCACTTGACCCGTGGC
CTGCACCACCTGCTCTTGCTTCTCACCATCTCCGTCTTCCTGGGGCTGGGCCAGCCCAGG
AACCCCAAAGGCAAGCGGAAGGGGCAAGGGCGGCCTGGGACCCTGGCCCCTGGACCTCAG
CAGGTGCCGCTGGACCTGGTGTCCAGGGCAAAGCCGTTTGCCCGCATGGAGGAATACGAG
AAGAACCTTGGGGACATGGTGGCCCAGCTGAGGAACAGCTCTGAACTGGCCAAGAGGAAG
TGTGAGGTCAACCTGCAGCTCTGGCTGTCCAACCAGAGGAGCCTGTCACCCTGGGGCTAC
AGCATCAACCACGACCCCAGCCGCATCCCCGCGGACCTGCCGGAGGCGCGGTGCCTGTGT
CTGGGCTGTGTGAACCCCTTCACCATGCAGGAGGACCGCAGCATGGTGAGCGTGCCCGTG
TTCAGCCAGGTGCCCGTGCGCCGCCGCCTCTGCCCCCTGCCGCCGCGCACCGGGCCCTGC
CGCCAGCGCGCGGTCATGGAGACCATCGCCGTGGGCTGCACCTGCATCTTCTGAGACGCC
CTCCCCGCGCCCCCAGCCGCGAGCCAGGCAGCGGCGGGTGAAGCGAGACCTCGGGTCTGC
TCCTGGGGCTCCGAAGCCAAAAGCCGTGGGAGGTCGATTCCGGCAGAGACGAAGGAGGAC
CCGTCACCCGGAGGCCTCCACCGCGGAGACAGCGTATTAAACGTTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               IL17B_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               IL17B_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, - strand, RNAz p=0.977042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.977042

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-362, gnl|bosTau2|chr7 (42176429-42176790)
               

               
               1-362, gnl|Hg17|chr5 (148736850-148736492)
               

               
               1-362, gnl|Mm7|chr18 (62079493-62079846)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr7 (42176429-42176790)
               

               
               1-362, gnl|Hg17|chr5 (148736850-148736492)
               

               
               1-362, gnl|Mm7|chr18 (62079493-62079846)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

	1-362, gnl\|bosTau2\|chr7 (42176429-42176790)
	1-362, gnl\|Hg17\|chr5 (148736850-148736492)
	1-362, gnl\|Mm7\|chr18 (62079493-62079846)