Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-d-04-0-UI.s1.3

Sequence:


               
               GCAGGCGGCGGCGGACGGCACTGGTCGGAGCGCGGGCGGCCCAGGACAGCGGCGCGGGTG
GGGGCCGGGGCCACGGGCGCAGAAGCCGGAGCCGCTGTAGCCGCAAGCCACTGCACGTGG
ACTTCAAGGAGCTGGGCTGGGATGACTGGATCATTGCGCCGCTGGACTACGAGGCGTACC
ACTGCGAGGGCGTCTGTGATTTTCCGCTGCGCTCGCACCTTGAGCCCACGAACCACGCCA
TCATTCAGACGCTACTGAACTCTATGGCGCCGGATGCGGCGCCAGCCTCCTGCTGCGTGC
CCGCGCGCCTCAGCCCCATCAGCATCCTCTACATCGACGCCGCCAACAACGTGGTCTACA
AGCAATACGAGGACATGGTAGTGGAGGCGTGCGGCTGCAGGTAGCATGAGGGCCAGGGAG
GGGGCAGCCGTGCCACCAAGGACGCCCTGCTGAAGAGCAGCTGCGGGCCAAGCCTATCAC
CTAGTGTGCGGTGCACGTCGGAGTCTGGCCCGGAGCCCACACGGAGGAGGGAGAGCGCAC
GTTCACACAACACTCATACCCACACACTCACCACTCGGGCACACATTTATGGTGGAAGTA
TCCGAAAGCCCTAGGAAGAGATGACCTGACGCTACCGAATGTCACATACGTGTGTTTTGT
AAACATCACCATTGCCCCATTTGGGGAGAGGATGATGTTTGCATTGCTGTTACAGTAACT
GGCAGGGAATCGGGTAGGAATGGGTTAGGGAATTGGGGCTTCAGCATGGGGGAACTAAAG
GGATCTTTGAGTAAGTCTTTTCTCACCCCTCCTCCGGCCGGGTTGGGGCTGAGTTCCCCG
TATTGCACCTGGGACCGGCAGAGGGCTGTAAAGCCCTTTCTGAAGGTTTGTGTTGCATGG
GCCGTTTACTCTGGGGAGGAACCGCTGCAGAAGTCTTTATCTTTTTTCTTTAACTTAAAA
AAAAAAAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCGGCGGCGGACGGCACTGGTCGGAGCGCGGGCGGCCCAGGACAGCGGCGCGGGTG
GGGGCCGGGGCCACGGGCGCAGAAGCCGGAGCCGCTGTAGCCGCAAGCCACTGCACGTGG
ACTTCAAGGAGCTGGGCTGGGATGACTGGATCATTGCGCCGCTGGACTACGAGGCGTACC
ACTGCGAGGGCGTCTGTGATTTTCCGCTGCGCTCGCACCTTGAGCCCACGAACCACGCCA
TCATTCAGACGCTACTGAACTCTATGGCGCCGGATGCGGCGCCAGCCTCCTGCTGCGTGC
CCGCGCGCCTCAGCCCCATCAGCATCCTCTACATCGACGCCGCCAACAACGTGGTCTACA
AGCAATACGAGGACATGGTAGTGGAGGCGTGCGGCTGCAGGTAGCATGAGGGCCAGGGAG
GGGGCAGCCGTGCCACCAAGGACGCCCTGCTGAAGAGCAGCTGCGGGCCAAGCCTATCAC
CTAGTGTGCGGTGCACGTCGGAGTCTGGCCCGGAGCCCACACGGAGGAGGGAGAGCGCAC
GTTCACACAACACTCATACCCACACACTCACCACTCGGGCACACATTTATGGTGGAAGTA
TCCGAAAGCCCTAGGAAGAGATGACCTGACGCTACCGAATGTCACATACGTGTGTTTTGT
AAACATCACCATTGCCCCATTTGGGGAGAGGATGATGTTTGCATTGCTGTTACAGTAACT
GGCAGGGAATCGGGTAGGAATGGGTTAGGGAATTGGGGCTTCAGCATGGGGGAACTAAAG
GGATCTTTGAGTAAGTCTTTTCTCACCCCTCCTCCGGCCGGGTTGGGGCTGAGTTCCCCG
TATTGCACCTGGGACCGGCAGAGGGCTGTAAAGCCCTTTCTGAAGGTTTGTGTTGCATGG
GCCGTTTACTCTGGGGAGGAACCGCTGCAGAAGTCTTTATCTTTTTTCTTTAACTTAAAA
AAAAAAAACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3641338|gb|AAC97113.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3641338|gb|AAC97113.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-810, gnl|bosTau2|chr11 (61732290-61733128)
               

               
               1-810, gnl|Hg17|chr2 (20792410-20793228)
               

               
               1-810, gnl|Mm7|chr12 (8254307-8253547)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-810, gnl|bosTau2|chr11 (61732290-61733128)
               

               
               1-810, gnl|Hg17|chr2 (20792410-20793228)
               

               
               1-810, gnl|Mm7|chr12 (8254307-8253547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-810, gnl\|bosTau2\|chr11 (61732290-61733128)
	1-810, gnl\|Hg17\|chr2 (20792410-20793228)
	1-810, gnl\|Mm7\|chr12 (8254307-8253547)