Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-d-11-0-UI.s1.3

Sequence:


               
               CTCCATGGGGCTGCTGAAGTCTCGGCCAGGCCTCTCCAGGGCTGCTGGCCTGCTCCTCCT
CTGGAGCGCTGCCCCAAACCTCGAGGCCCAGCCGCCACCTGCCGCTGGGGACGGAAGCTG
CGGTGCAGCCCCAGGAAAAGGCCCGCTTCCACTCCAGTGTCCAGTGGGGCGCCCCAGGCC
CCAACCTGAAGGGCCGGTCATGACGTAGGCCACAGCTTCCGTGGGAGCGCACCCCCGCTG
CTGCCGCCACCTCTCAGCTGCCGTGGCCCAGCCTACATCAGATCTAGTCTTGGATTCCAT
GGCTGTCTGTCCATCCGGCCCTCACTCCAGCCCCTCGCCGGTTCCTGGTGTCTGGTTCCT
GCTCCTCACAGCCTCTGGCCTCTGGCCTCCCAGGCTCCCCTCAAAGGCCTGGCAGGAAGA
GGTCTCATCCCTGCCCTGCCTCTTGTCCCCACAGGGGACCCAGACAAAGCACAGCAGCAG
CTCGGAGACAGGAATAGAAATTTCATTAAAATCTATGGACTTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCATGGGGCTGCTGAAGTCTCGGCCAGGCCTCTCCAGGGCTGCTGGCCTGCTCCTCCT
CTGGAGCGCTGCCCCAAACCTCGAGGCCCAGCCGCCACCTGCCGCTGGGGACGGAAGCTG
CGGTGCAGCCCCAGGAAAAGGCCCGCTTCCACTCCAGTGTCCAGTGGGGCGCCCCAGGCC
CCAACCTGAAGGGCCGGTCATGACGTAGGCCACAGCTTCCGTGGGAGCGCACCCCCGCTG
CTGCCGCCACCTCTCAGCTGCCGTGGCCCAGCCTACATCAGATCTAGTCTTGGATTCCAT
GGCTGTCTGTCCATCCGGCCCTCACTCCAGCCCCTCGCCGGTTCCTGGTGTCTGGTTCCT
GCTCCTCACAGCCTCTGGCCTCTGGCCTCCCAGGCTCCCCTCAAAGGCCTGGCAGGAAGA
GGTCTCATCCCTGCCCTGCCTCTTGTCCCCACAGGGGACCCAGACAAAGCACAGCAGCAG
CTCGGAGACAGGAATAGAAATTTCATTAAAATCTATGGACTTTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-472, - strand, RNAz p=0.999534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-472, - strand, RNAz p=0.999534

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               387-501, - strand, RNAmicro p=0.999606

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               387-501, - strand, RNAmicro p=0.999606

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-527, gnl|bosTau2|chr13 (23905359-23905902)
               

               
               1-527, gnl|Hg17|chr1 (44130752-44131293)
               

               
               1-527, gnl|Mm7|chr4 (117246218-117245699)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-527, gnl|bosTau2|chr13 (23905359-23905902)
               

               
               1-527, gnl|Hg17|chr1 (44130752-44131293)
               

               
               1-527, gnl|Mm7|chr4 (117246218-117245699)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	1-527, gnl\|bosTau2\|chr13 (23905359-23905902)
	1-527, gnl\|Hg17\|chr1 (44130752-44131293)
	1-527, gnl\|Mm7\|chr4 (117246218-117245699)