Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-d-16-0-UI.s1.3

Sequence:


               
               GGGCTCAGTTTCCCCACTCTAGGGGGAGTTGGGGGCTATTTCTATGCAAATAGAAATGGG
CACATTCCTCCTCCTTCCCTTTCCTCCACTCTTCCCCCACATCTCTAAAGTGTGGGAGCA
GAAAGGACCTTTATTTTCCTACATTGAGGAGGCAAGGTGGGAGGCATGGGAGAGGTGGGT
GAATCTAATAGAAAGCAGTGGGAGGGAAGATGCAGAGACTACCCAACCCCCGCCTGGAAG
GGTCAAAGAAAAGCCAGAGTTCGTGTCCGTACCCCAGTGCTGGACTGGCTGAAGAGTCTA
GTTTCCAGCTGTTCCTCAGGTTGGAGGGCCTGGGCACGAGCAGGTTCCTTTTTGCTCCCT
CTCATGGGCCTAGGACGCGTAAGAGCCAGGGAACTGAAGAGCGAGGATCACTGGATCTTT
TCTGGCCCCAGAATTTATCCCATGGAGCACCCAGCATTAGATCCCGCCTCCGCCTCTGCT
CTGGAGACTGCTGGGAACATGCCCCACTGGGGCTGAGTGGGGATGAGGGCAGAGTCCCCT
CTTCTACTCCTTTATTCCTACTCAGACTGTTGCACATACTGACCTAGGGAGTTCGGAGAA
TTGAGATCCTTAGGTTTTAACTCTAATCCTGCTTCCACCTAGAGTCCCAATGTGGTTACT
GCAGGCAACCTTTCCTCTCTCTGCAGTCAAGAACCCCTCCCCAAGCCAGAAAGGGGATGA
AGTTACCTACGGTGTTTTCTGTTGCACTGATCCCCAGTTCAGTCCAGGAGGGGACCTGGT
AACCCCTCTCCCTCAATATCCTGGCACCTTGGGCTTACGAGCGCCTCCTAGCCAAGTCAC
CAGAGTCCAGTGACCCCAGCCTCCTGCCTGTCCCAAGATACCCCTGCCCACCCTGACCGT
GCTAACTGTGTGTACATATATATTCTACATATATGTATATTAAACCCGCACTGCCATGTC
TGCCCTTTTATTGTGGTGTCTAGCATTAACTTATTGTCTAGGCCAGGGCGGGGGTGGGAG
GGAAATGCCACAGTGAAGGGAGTGGCAGAGACAAATTGCTACATAGTCAAAACGAAAAAG
AAAACTTAAAAAAAAAAAATTCGCATGTCAAGAGACTATTTAGAGTAAGTTTAAGCTAGG
AGCTTTTAGGATGTGGGAGCAAAGCTTTAGGTGGAGGGGAGGGCTGACTGTTGGAAGAGG
GAAGAAGCCAGACTGGTTGGAGAGCACCCTTCTACTCCTAACCCAGCCCAGCCTGCCTGT
CCCTTCTGGCCACTGCTGCGGACACCTGCCTTAACACATACACCTCGAGTATTCCACAGG
TTTGCCTTAAAGGACCTTCCCAAGTTTCCCCAGCCCTGTCTGGCTTCTCCCTCAAGAAGA
GAGAGGGATACCTGTAGAACTAAGGAGGAGAAGGTAAGCATGAATTGTCCTTCCAAGGCA
GCATATGTTAAGTGAGATTGAGAGAGAGAGAGAGAGAGAGACAGAAAGAGAGAATGAGAA
TAAAGAGTTTCCTTCAAAGAGAGAAGTTGAGATGGGAGAAGGGAGACAGGGTCATTTTCA
GTGGAGTCTAGTAATTTCTGTAAGGCAAAATAATCTAAAAAGACTAACCTGCCCACCCAC
CCCTTGTACTGCTGTGAAATTGCCCCTATCCTGTGCTCCTCCGTCTGCAGTGTGCACGGC
CTTGTTCTAACCCTGGAATAAAGGTGATTGATTGTACTGTATTAAATGATTCTAGGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTCAGTTTCCCCACTCTAGGGGGAGTTGGGGGCTATTTCTATGCAAATAGAAATGGG
CACATTCCTCCTCCTTCCCTTTCCTCCACTCTTCCCCCACATCTCTAAAGTGTGGGAGCA
GAAAGGACCTTTATTTTCCTACATTGAGGAGGCAAGGTGGGAGGCATGGGAGAGGTGGGT
GAATCTAATAGAAAGCAGTGGGAGGGAAGATGCAGAGACTACCCAACCCCCGCCTGGAAG
GGTCAAAGAAAAGCCAGAGTTCGTGTCCGTACCCCAGTGCTGGACTGGCTGAAGAGTCTA
GTTTCCAGCTGTTCCTCAGGTTGGAGGGCCTGGGCACGAGCAGGTTCCTTTTTGCTCCCT
CTCATGGGCCTAGGACGCGTAAGAGCCAGGGAACTGAAGAGCGAGGATCACTGGATCTTT
TCTGGCCCCAGAATTTATCCCATGGAGCACCCAGCATTAGATCCCGCCTCCGCCTCTGCT
CTGGAGACTGCTGGGAACATGCCCCACTGGGGCTGAGTGGGGATGAGGGCAGAGTCCCCT
CTTCTACTCCTTTATTCCTACTCAGACTGTTGCACATACTGACCTAGGGAGTTCGGAGAA
TTGAGATCCTTAGGTTTTAACTCTAATCCTGCTTCCACCTAGAGTCCCAATGTGGTTACT
GCAGGCAACCTTTCCTCTCTCTGCAGTCAAGAACCCCTCCCCAAGCCAGAAAGGGGATGA
AGTTACCTACGGTGTTTTCTGTTGCACTGATCCCCAGTTCAGTCCAGGAGGGGACCTGGT
AACCCCTCTCCCTCAATATCCTGGCACCTTGGGCTTACGAGCGCCTCCTAGCCAAGTCAC
CAGAGTCCAGTGACCCCAGCCTCCTGCCTGTCCCAAGATACCCCTGCCCACCCTGACCGT
GCTAACTGTGTGTACATATATATTCTACATATATGTATATTAAACCCGCACTGCCATGTC
TGCCCTTTTATTGTGGTGTCTAGCATTAACTTATTGTCTAGGCCAGGGCGGGGGTGGGAG
GGAAATGCCACAGTGAAGGGAGTGGCAGAGACAAATTGCTACATAGTCAAAACGAAAAAG
AAAACTTAAAAAAAAAAAATTCGCATGTCAAGAGACTATTTAGAGTAAGTTTAAGCTAGG
AGCTTTTAGGATGTGGGAGCAAAGCTTTAGGTGGAGGGGAGGGCTGACTGTTGGAAGAGG
GAAGAAGCCAGACTGGTTGGAGAGCACCCTTCTACTCCTAACCCAGCCCAGCCTGCCTGT
CCCTTCTGGCCACTGCTGCGGACACCTGCCTTAACACATACACCTCGAGTATTCCACAGG
TTTGCCTTAAAGGACCTTCCCAAGTTTCCCCAGCCCTGTCTGGCTTCTCCCTCAAGAAGA
GAGAGGGATACCTGTAGAACTAAGGAGGAGAAGGTAAGCATGAATTGTCCTTCCAAGGCA
GCATATGTTAAGTGAGATTGAGAGAGAGAGAGAGAGAGAGACAGAAAGAGAGAATGAGAA
TAAAGAGTTTCCTTCAAAGAGAGAAGTTGAGATGGGAGAAGGGAGACAGGGTCATTTTCA
GTGGAGTCTAGTAATTTCTGTAAGGCAAAATAATCTAAAAAGACTAACCTGCCCACCCAC
CCCTTGTACTGCTGTGAAATTGCCCCTATCCTGTGCTCCTCCGTCTGCAGTGTGCACGGC
CTTGTTCTAACCCTGGAATAAAGGTGATTGATTGTACTGTATTAAATGATTCTAGGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96FS5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96FS5_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-269, - strand, RNAz p=0.997814
               

               
               705-811, - strand, RNAz p=0.925966
               

               
               888-1007, - strand, RNAz p=0.937322
               

               
               1533-1637, - strand, RNAz p=0.631802

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-269, - strand, RNAz p=0.997814
               

               
               705-811, - strand, RNAz p=0.925966
               

               
               888-1007, - strand, RNAz p=0.937322
               

               
               1533-1637, - strand, RNAz p=0.631802

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1740, gnl|bosTau2|chr3 (4826914-4825142)
               

               
               1-1740, gnl|Hg17|chr1 (156996580-156998254)
               

               
               1-1740, gnl|Mm7|chr1 (172168573-172166881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1740, gnl|bosTau2|chr3 (4826914-4825142)
               

               
               1-1740, gnl|Hg17|chr1 (156996580-156998254)
               

               
               1-1740, gnl|Mm7|chr1 (172168573-172166881)

Expressed library(ies): 47 entry(ies)

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Expressed library(ies): 47 entry(ies)

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               spc (3.74107)
               

               
               fbs (2.98089)
               

               
               hyp (1.5712)
               

               
               fhi (1.5262)
               

               
               fce (1.35796)
               

               
               che (1.22683)
               

               
               fcc (0.988924)
               

               
               aor (0.976372)
               

               
               cbe (0.956938)
               

               
               ebs (0.94641)
               

               
               ecc (0.920281)
               

               
               eye (0.852515)
               

               
               nlu (0.766724)
               

               
               sto (0.719295)
               

               
               cmu (0.55918)
               

               
               fco (0.471624)
               

               
               hea (0.408998)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               cty (0.31224)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (3.74107)
               

               
               fbs (2.98089)
               

               
               hyp (1.5712)
               

               
               fhi (1.5262)
               

               
               fce (1.35796)
               

               
               che (1.22683)
               

               
               fcc (0.988924)
               

               
               aor (0.976372)
               

               
               cbe (0.956938)
               

               
               ebs (0.94641)
               

               
               ecc (0.920281)
               

               
               eye (0.852515)
               

               
               nlu (0.766724)
               

               
               sto (0.719295)
               

               
               cmu (0.55918)
               

               
               fco (0.471624)
               

               
               hea (0.408998)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               cty (0.31224)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-269, - strand, RNAz p=0.997814
	705-811, - strand, RNAz p=0.925966
	888-1007, - strand, RNAz p=0.937322
	1533-1637, - strand, RNAz p=0.631802

	1-1740, gnl\|bosTau2\|chr3 (4826914-4825142)
	1-1740, gnl\|Hg17\|chr1 (156996580-156998254)
	1-1740, gnl\|Mm7\|chr1 (172168573-172166881)

	spc (3.74107)
	fbs (2.98089)
	hyp (1.5712)
	fhi (1.5262)
	fce (1.35796)
	che (1.22683)
	fcc (0.988924)
	aor (0.976372)
	cbe (0.956938)
	ebs (0.94641)
	ecc (0.920281)
	eye (0.852515)
	nlu (0.766724)
	sto (0.719295)
	cmu (0.55918)
	fco (0.471624)
	hea (0.408998)
	bla (0.373042)
	rec (0.346141)
	cty (0.31224)
	csk (0.281492)
	cst (0.280073)
	cov (0.264306)
	eep (0.245128)
	eru (0.240096)
	clu (0.239292)
	pgl (0.236967)
	med (0.232504)
	jca (0.22792)
	mas (0.210305)
	nep (0.183925)
	sag (0.182715)
	ton (0.1755)
	sin (0.174948)
	nco (0.161734)
	eli (0.151814)
	cag (0.151194)
	fat (0.147427)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	nbm (0.0993246)
	ldo (0.0970026)