Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-g-10-0-UI.s1.3

Sequence:


               
               AAGAGCGGGGGGCACAGCACATGGAGGCACACNTGATGTTCCCAGCACAATTCAGATGTT
CGGAGCACAGCTGTGAAGCACACACCCCTTCCCCTCTTGCCTGGGGCCCGACTTTCTCAC
TAGTGGCACTTCTCCCCCAGAACAGCGGTCCCTGGACGTCAGGGGCTCACACCCGGNGAA
AGAGATGATTTCACTGCCCCTTTGGGCCACCACCCCCTCCTTGTACAAGCACAGCAAATC
TCCATCTTTGAGAGCTATGGTGGGCAGGGCAGGGCGGGCCACAGTGCTTGGCCTGGCTCC
CTTCACAGAGGGTCCTGACTCACTCTGTGCCTCTGACTGCTCTCAGCCTGGGAGGGACAG
ACTAGGCCCAGGGCGCCGTCCTTCACCCCTTAGTCTCTTGGTTCCTCCCCCTCCTTGGAG
TCCACCCAGCACCTCCCTTACCCGTCCCCCCACCCCGTGCTCCCATTTGCAGCCCTCTCA
GCCACACCCATCCTTCCTGCGTGTGTGAGGGGAGAGGGAGACCCACATCTCCCCAAAAAC
GTGAGCTTTGGGGGCACAACATCCCCCCTTAGGCCTCCTCACCTGACACCACCTGCTCCC
TGGCCCCGTGCCTGATCCCAAGCAGAAATAGCAACAGGAAGCACAGGGCGCCGGGAGAGA
CACTGGACTAAATATACTCTTCTGTGTATTCTTTCTATTGTATATTCAATCTGTACATGT
GGGTGTAAATGCTGGTAAATGACAAACCCAATATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCGGGGGGCACAGCACATGGAGGCACACNTGATGTTCCCAGCACAATTCAGATGTT
CGGAGCACAGCTGTGAAGCACACACCCCTTCCCCTCTTGCCTGGGGCCCGACTTTCTCAC
TAGTGGCACTTCTCCCCCAGAACAGCGGTCCCTGGACGTCAGGGGCTCACACCCGGNGAA
AGAGATGATTTCACTGCCCCTTTGGGCCACCACCCCCTCCTTGTACAAGCACAGCAAATC
TCCATCTTTGAGAGCTATGGTGGGCAGGGCAGGGCGGGCCACAGTGCTTGGCCTGGCTCC
CTTCACAGAGGGTCCTGACTCACTCTGTGCCTCTGACTGCTCTCAGCCTGGGAGGGACAG
ACTAGGCCCAGGGCGCCGTCCTTCACCCCTTAGTCTCTTGGTTCCTCCCCCTCCTTGGAG
TCCACCCAGCACCTCCCTTACCCGTCCCCCCACCCCGTGCTCCCATTTGCAGCCCTCTCA
GCCACACCCATCCTTCCTGCGTGTGTGAGGGGAGAGGGAGACCCACATCTCCCCAAAAAC
GTGAGCTTTGGGGGCACAACATCCCCCCTTAGGCCTCCTCACCTGACACCACCTGCTCCC
TGGCCCCGTGCCTGATCCCAAGCAGAAATAGCAACAGGAAGCACAGGGCGCCGGGAGAGA
CACTGGACTAAATATACTCTTCTGTGTATTCTTTCTATTGTATATTCAATCTGTACATGT
GGGTGTAAATGCTGGTAAATGACAAACCCAATATTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               103-203, + strand, RNAz p=0.63251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-203, + strand, RNAz p=0.63251

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               27-234, gnl|bosTau2|chr3 (25244039-25243830)
               

               
               27-234, gnl|canFam2|chr6 (44836369-44835797)
               

               
               27-234, gnl|echTel1|scaffold_168693 (10211-9758)
               

               
               27-234, gnl|hg17|chr1 (110453910-110454580)
               

               
               27-234, gnl|Hg17|chr1 (110453998-110454231)
               

               
               27-234, gnl|mm7|chr3 (107288742-107288099)
               

               
               27-234, gnl|Mm7|chr3 (107288645-107288421)
               

               
               27-234, gnl|panTro1|chr1 (111829081-111828411)
               

               
               27-234, gnl|rheMac2|chr1 (113264170-113264811)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-234, gnl|bosTau2|chr3 (25244039-25243830)
               

               
               27-234, gnl|canFam2|chr6 (44836369-44835797)
               

               
               27-234, gnl|echTel1|scaffold_168693 (10211-9758)
               

               
               27-234, gnl|hg17|chr1 (110453910-110454580)
               

               
               27-234, gnl|Hg17|chr1 (110453998-110454231)
               

               
               27-234, gnl|mm7|chr3 (107288742-107288099)
               

               
               27-234, gnl|Mm7|chr3 (107288645-107288421)
               

               
               27-234, gnl|panTro1|chr1 (111829081-111828411)
               

               
               27-234, gnl|rheMac2|chr1 (113264170-113264811)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	27-234, gnl\|bosTau2\|chr3 (25244039-25243830)
	27-234, gnl\|canFam2\|chr6 (44836369-44835797)
	27-234, gnl\|echTel1\|scaffold_168693 (10211-9758)
	27-234, gnl\|hg17\|chr1 (110453910-110454580)
	27-234, gnl\|Hg17\|chr1 (110453998-110454231)
	27-234, gnl\|mm7\|chr3 (107288742-107288099)
	27-234, gnl\|Mm7\|chr3 (107288645-107288421)
	27-234, gnl\|panTro1\|chr1 (111829081-111828411)
	27-234, gnl\|rheMac2\|chr1 (113264170-113264811)