Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-j-06-0-UI.s1.3

Sequence:


               
               AGCTCAGTCTCCTTGTCCCTGCGGGCGGTGTCCAGGGAGACCAAGGTGTGGCCCCTGTGC
TCGCCCTGGCCGCACTCCCGGCAGATGCACTGCCCATCTGAGCAGCAGAAGGCGACCAGC
GGGCTGCGGTGGGCAGGGCACACGCGCAGGTCCCGGTCCTTGGTGGGCTCGGTCAGCTGG
TGGCCATGCAGCTTGCTGTTCTCCTGGTGCGGCCGCAGGTGCTCAGGGCAGTAGTTCACC
ATGCAGGTCAGGCAGGACTTCACGGCCCTCACCCTGCTGGCCCCGAGGCAGAAGTCACAC
AGGACCTCCTCCTCCTCCCCCTCGGCCTTGGGGCCCTCCTGCCCGGCAGAGTCGGCAGAA
CCGCTGCCCTGTCCCCCAGACTCCCCTGGGGGACTCTCCAGGGAGGCTGAGTCCTCCTCT
GCCAGGCTGCCCTGTCCCCCAGGCTCCCCTGGGGGACTCTCCAGGGAGGCTGAGTCCTCC
TCTGCCAGGCTGGCTGAAGCCAAGTCTGGGCTGAGAGTGGCTGGAGGGTGAGTGGGGACC
CCGGGCAGCGGCCCTGGGGCCATCAGCTCCAATTCAGCCATGTAGAAGTTCTGCCACCAA
GCTGGGCTTCCTCTGCCCTGTGGCCCAGGATCCCACAGCCCAGCCAGACAGGAGAACCAC
GCCTGCCCAGCCGCCGGTCACTACTCAGCTCAGGCTCAGACAATGAGCTGTGCTGATGAC
AGGGCTGTCGACTCTGACTCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCAGTCTCCTTGTCCCTGCGGGCGGTGTCCAGGGAGACCAAGGTGTGGCCCCTGTGC
TCGCCCTGGCCGCACTCCCGGCAGATGCACTGCCCATCTGAGCAGCAGAAGGCGACCAGC
GGGCTGCGGTGGGCAGGGCACACGCGCAGGTCCCGGTCCTTGGTGGGCTCGGTCAGCTGG
TGGCCATGCAGCTTGCTGTTCTCCTGGTGCGGCCGCAGGTGCTCAGGGCAGTAGTTCACC
ATGCAGGTCAGGCAGGACTTCACGGCCCTCACCCTGCTGGCCCCGAGGCAGAAGTCACAC
AGGACCTCCTCCTCCTCCCCCTCGGCCTTGGGGCCCTCCTGCCCGGCAGAGTCGGCAGAA
CCGCTGCCCTGTCCCCCAGACTCCCCTGGGGGACTCTCCAGGGAGGCTGAGTCCTCCTCT
GCCAGGCTGCCCTGTCCCCCAGGCTCCCCTGGGGGACTCTCCAGGGAGGCTGAGTCCTCC
TCTGCCAGGCTGGCTGAAGCCAAGTCTGGGCTGAGAGTGGCTGGAGGGTGAGTGGGGACC
CCGGGCAGCGGCCCTGGGGCCATCAGCTCCAATTCAGCCATGTAGAAGTTCTGCCACCAA
GCTGGGCTTCCTCTGCCCTGTGGCCCAGGATCCCACAGCCCAGCCAGACAGGAGAACCAC
GCCTGCCCAGCCGCCGGTCACTACTCAGCTCAGGCTCAGACAATGAGCTGTGCTGATGAC
AGGGCTGTCGACTCTGACTCCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               309-420, + strand, RNAz p=0.940504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-420, + strand, RNAz p=0.940504

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-420, gnl|bosTau2|chr19 (23562938-23563349)
               

               
               9-420, gnl|Hg17|chr17 (15495130-15495526)
               

               
               9-420, gnl|Mm7|chr11 (62902565-62902172)
               


               
               437-663, gnl|bosTau2|chr19 (23563303-23563535)
               

               
               437-663, gnl|Hg17|chr17 (15495480-15495733)
               

               
               437-663, gnl|Mm7|chr11 (62902209-62901974)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-420, gnl|bosTau2|chr19 (23562938-23563349)
               

               
               9-420, gnl|Hg17|chr17 (15495130-15495526)
               

               
               9-420, gnl|Mm7|chr11 (62902565-62902172)
               


               
               437-663, gnl|bosTau2|chr19 (23563303-23563535)
               

               
               437-663, gnl|Hg17|chr17 (15495480-15495733)
               

               
               437-663, gnl|Mm7|chr11 (62902209-62901974)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	9-420, gnl\|bosTau2\|chr19 (23562938-23563349)
	9-420, gnl\|Hg17\|chr17 (15495130-15495526)
	9-420, gnl\|Mm7\|chr11 (62902565-62902172)

	437-663, gnl\|bosTau2\|chr19 (23563303-23563535)
	437-663, gnl\|Hg17\|chr17 (15495480-15495733)
	437-663, gnl\|Mm7\|chr11 (62902209-62901974)