Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzc-m-08-0-UI.s1.3

Sequence:


               
               ATCTTCCAGATCACACCGCTGAATTTGACCCAGTGGCTGATGGTGCTGAAAATCTCCTTG
CCTGTGATTCTAATGGATGAGACCCTCAAGTTTGTGGCCCGCAACTACCTGGAACCTGGT
AAAGAGTGTGTGCAGCCTGCCACCAAATCCTGCTCGTTCTCGGCATGTACCGATGGGATT
TCCTGGCCCTTTGTGCTGCTCATAATGCCGCTGGTGATCTGGGTCTATAGCACAGACACT
AACTTTAGTGATATGTTCTGGTCTTGACTGACAGTTTTACATAAAGATGTTTAACTTAAT
CAATTAATTTTTTTATTGTTTAAAGCAACTGTCTATTTCTGCTGAATTTTCACATGAACA
TATTGGCTGGTAAAGGAGGTTTCATACTCTAGATTTTGTTTTGCTTTTTCTGACTCCAGT
GGGGCAAGATTTTCCTTTTTTATACACATAATTAAAGTGTCCATTGACATGTACAGAGAA
CTAACACTATTTTATGCAAATATTTTTTTGTAGATGAAAAAGCATGTACAGTGTTCTGTT
TAATACTCATCCTTGTATAAAAAAAAAAAGAGTTGAGCCAGCAGACATTGTCAGCAAATT
AATTGGCAGCAGATTTTAGGAAATGAATGTGTGTGGTTTTTTCTAAGACTAAATAGCATG
TATTGTGTCTTCTGCATGATCATCTGGATTTAATCTGAGATCACAGTCTAATTTTTATTC
ATAAGCCAATTTTTCTGCACTGAGCAGAGTACTGCTACCTCAGTCAGTATTTTTTGGTTT
GCCACCCCCCCGTCACCCTTCTCAGCCCTTGTCACCTCCACCCCATCCTCCACCCCCGCC
CTGCTCGGCTGCTTCTCCTGTAGGGTTTTGATGGTTCTGTTTACATCAGTCTTAACAAGA
GGTATGCCTGTTCTCGCTTGTGCAGAAAACATTGTTCCAGATTCAATCAACTGGGTTCGT
GTCCCCTCATGTAGTTTTTAAGGTTATTTATTTAAATGTCTAATGTATTTTATTGTAACA
GACATTGTTTTGCCAACATTGCCTATTTCAGTGGCACTTCACAATCTAGTTTAAAAAGGA
AAATAAACATTTTAAATGGACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTCCAGATCACACCGCTGAATTTGACCCAGTGGCTGATGGTGCTGAAAATCTCCTTG
CCTGTGATTCTAATGGATGAGACCCTCAAGTTTGTGGCCCGCAACTACCTGGAACCTGGT
AAAGAGTGTGTGCAGCCTGCCACCAAATCCTGCTCGTTCTCGGCATGTACCGATGGGATT
TCCTGGCCCTTTGTGCTGCTCATAATGCCGCTGGTGATCTGGGTCTATAGCACAGACACT
AACTTTAGTGATATGTTCTGGTCTTGACTGACAGTTTTACATAAAGATGTTTAACTTAAT
CAATTAATTTTTTTATTGTTTAAAGCAACTGTCTATTTCTGCTGAATTTTCACATGAACA
TATTGGCTGGTAAAGGAGGTTTCATACTCTAGATTTTGTTTTGCTTTTTCTGACTCCAGT
GGGGCAAGATTTTCCTTTTTTATACACATAATTAAAGTGTCCATTGACATGTACAGAGAA
CTAACACTATTTTATGCAAATATTTTTTTGTAGATGAAAAAGCATGTACAGTGTTCTGTT
TAATACTCATCCTTGTATAAAAAAAAAAAGAGTTGAGCCAGCAGACATTGTCAGCAAATT
AATTGGCAGCAGATTTTAGGAAATGAATGTGTGTGGTTTTTTCTAAGACTAAATAGCATG
TATTGTGTCTTCTGCATGATCATCTGGATTTAATCTGAGATCACAGTCTAATTTTTATTC
ATAAGCCAATTTTTCTGCACTGAGCAGAGTACTGCTACCTCAGTCAGTATTTTTTGGTTT
GCCACCCCCCCGTCACCCTTCTCAGCCCTTGTCACCTCCACCCCATCCTCCACCCCCGCC
CTGCTCGGCTGCTTCTCCTGTAGGGTTTTGATGGTTCTGTTTACATCAGTCTTAACAAGA
GGTATGCCTGTTCTCGCTTGTGCAGAAAACATTGTTCCAGATTCAATCAACTGGGTTCGT
GTCCCCTCATGTAGTTTTTAAGGTTATTTATTTAAATGTCTAATGTATTTTATTGTAACA
GACATTGTTTTGCCAACATTGCCTATTTCAGTGGCACTTCACAATCTAGTTTAAAAAGGA
AAATAAACATTTTAAATGGACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1364247|emb|CAA34825.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1364247|emb|CAA34825.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               662-850, + strand, RNAz p=0.951451

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               662-850, + strand, RNAz p=0.951451

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_170665, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_170665, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr17 (30342334-30341246)
               

               
               1-1104, gnl|Hg17|chr12 (109246729-109247842)
               

               
               1-1104, gnl|Mm7|chr5 (121691645-121690556)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr17 (30342334-30341246)
               

               
               1-1104, gnl|Hg17|chr12 (109246729-109247842)
               

               
               1-1104, gnl|Mm7|chr5 (121691645-121690556)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               sin (0.524843)
               

               
               cje (0.330469)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               cje (0.330469)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	1-1104, gnl\|bosTau2\|chr17 (30342334-30341246)
	1-1104, gnl\|Hg17\|chr12 (109246729-109247842)
	1-1104, gnl\|Mm7\|chr5 (121691645-121690556)

	sin (0.524843)
	cje (0.330469)
	cov (0.264306)
	cbe (0.239234)
	ece (0.229305)
	cty (0.20816)
	tes (0.207814)
	mgm (0.180343)
	ill (0.175593)
	fbs (0.175346)
	tbr (0.154178)
	liv (0.146284)
	spl (0.143184)
	pla (0.133672)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)