Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzd-a-11-0-UI.s1.3

Sequence:


               
               TGTCCACCTTCCAGGATCTGCACATTCAAAAACCTGTGAAAGAGGTTCAGTCTTCTCTAA
TTGAAACAGTGTACAGATACCGATCTGACCTGCAAATCATTTTTAATATCATTGACTCTG
ATCACTCAGGCCTCATCTCCATGGAAGAATTCCGTAGCATGTGGAAACTTTTCAAGAGCC
ACTACAGTGTTCATATTGATGATTCCCAATTTGATGAGCTCGCTGAAAGGATGGACTTAA
ACAAAGATGGAAGCATTGACTTTAATGAGTTTTTGAAGGCTTTCTATGTAGTGCATAAAT
TTGATAAGCTGAGCAAATCAGACACCAAGCTTGCCTAACAAGAATTAGAGCTTTCTCTCC
TTGTAAACAGTTGGGCCCAAATCACTGTATACAATCTTTGCCACAACCCTTGAAATTCAC
ATCAGTCGTAGAGAAAAGTAGACCCTAATTACTGGCACAAGCAGATGTCTGGTGTGGGAG
TCCCTAGTAAATTGTACGTGGTAAGACTAGGTTAAGTGTCAGCTGATAGGATTTAGTTCC
AGTGGTGGGACCCACACACTGCCAGGTAGAAACTGGGTTTGAGCCTGGTGTTGGTTCCTT
GGATGCCACCTAACCAGGAGATCTGAGCAGTTTGGAAAGACATCGAAAGGAGCTCCCCAG
AGCATCGGAGCAAAGTGCAACACCTGCGAGTGGCTGAGGGATGGGAAGAGGACTGCCAGA
CTCTTAATGGAATAAAATATATCCATCTTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCACCTTCCAGGATCTGCACATTCAAAAACCTGTGAAAGAGGTTCAGTCTTCTCTAA
TTGAAACAGTGTACAGATACCGATCTGACCTGCAAATCATTTTTAATATCATTGACTCTG
ATCACTCAGGCCTCATCTCCATGGAAGAATTCCGTAGCATGTGGAAACTTTTCAAGAGCC
ACTACAGTGTTCATATTGATGATTCCCAATTTGATGAGCTCGCTGAAAGGATGGACTTAA
ACAAAGATGGAAGCATTGACTTTAATGAGTTTTTGAAGGCTTTCTATGTAGTGCATAAAT
TTGATAAGCTGAGCAAATCAGACACCAAGCTTGCCTAACAAGAATTAGAGCTTTCTCTCC
TTGTAAACAGTTGGGCCCAAATCACTGTATACAATCTTTGCCACAACCCTTGAAATTCAC
ATCAGTCGTAGAGAAAAGTAGACCCTAATTACTGGCACAAGCAGATGTCTGGTGTGGGAG
TCCCTAGTAAATTGTACGTGGTAAGACTAGGTTAAGTGTCAGCTGATAGGATTTAGTTCC
AGTGGTGGGACCCACACACTGCCAGGTAGAAACTGGGTTTGAGCCTGGTGTTGGTTCCTT
GGATGCCACCTAACCAGGAGATCTGAGCAGTTTGGAAAGACATCGAAAGGAGCTCCCCAG
AGCATCGGAGCAAAGTGCAACACCTGCGAGTGGCTGAGGGATGGGAAGAGGACTGCCAGA
CTCTTAATGGAATAAAATATATCCATCTTTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887293|ref|XP_596637.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887293|ref|XP_596637.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-753, gnl|bosTau2|chrX (39737229-39736568)
               

               
               94-753, gnl|Hg17|chrX (18605015-18605692)
               

               
               94-753, gnl|Mm7|chrX (155398081-155397456)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-753, gnl|bosTau2|chrX (39737229-39736568)
               

               
               94-753, gnl|Hg17|chrX (18605015-18605692)
               

               
               94-753, gnl|Mm7|chrX (155398081-155397456)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.415628)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)

	94-753, gnl\|bosTau2\|chrX (39737229-39736568)
	94-753, gnl\|Hg17\|chrX (18605015-18605692)
	94-753, gnl\|Mm7\|chrX (155398081-155397456)

	tes (0.415628)
	cbe (0.239234)
	eye (0.170503)
	cje (0.165235)
	fco (0.157208)
	liv (0.146284)
	hyp (0.142837)