Ss1.1-mCP1-MI-P-CP1-nzd-a-15-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGCAGCCACCTGTCTATGCCGCAGAGACCCCGGGGTGGAGATGTTTTCATCTCGGTT TTCTTCCTGGTTTGTCCTGTTCTTCCAACGGGAGGCAGGGGACGGTGTTTGCACTTTCTT GCTAGGAACCTGAAGCCGCAAAGCTGATGGCATCCTTCTTCCCTGTCCAGGAAAGCGAAG CGTCTGGCTTGGGAACAGAATGCTCTAAGATTTGGAGCTCCTCCCATCCCATTAAAGCCG GGATGCTGTCTGTGAGCAACGGTGCACAATAATAAGTAGTTTCACATTTAACCAATCCTT GGGATCGGCTTTGACAGCTTTCTTGGGCCTGGTGGGCGCGAGGCAGGGGGAGGGGGAGGA GGAGGAGCCCGCAGCCCAAGCGGCAGTGGCGGCAGCGGTGGCTGCGGCGCCCGAGTTTCC CGTAGGGCTCCGCCTCGGAGCGGGCGGCGGTGGAGGAGGAGACTGAGGAGCAGGATGGCG GCCTCGGCCCTGTACGCCTGCACCAAGTGCACCCAGCGCTATCCCTTCGAGGAGCTCTCC CAGGGCCAGCAGCTCTGCAAGGAATGTCGGATTGCGCATCCTATTGTAAAATGTACTTAC TGCAGATCAGAATTTCAACAAGAGAGCAAAACTAACACAATTTGTAAGAAGTGTGCTCAA AATGTGAAGCAGTTTGGCACCCCTAAGCCTTGTCAGTACTGTAACATAATTGCAGCATTT ATTGGTACAAAGTGTCAGCGTTGCACAAATTCAGAAAAAAAATATGGACCACCTCAGACC TGTGAACAGTGCAAACAACAGTGTGCTTTTGATCGAAAGGAGGAGGGAAGAAGAAAGGTT GATGGGAAATTATTATGCTGGCTCTGTACTTTATCATACAAGAGAGTTTTACAGAAGACA AAAGAACAAAGGAAGGGCCTGGGATCCTCACATTCAAATTCCTCTTCTTCATCCCTCACT GAGAAAGACCAGCATCATTCAAAACATCACCACCACCACCATCACCATCACCATCGGCAC GGCAGTAGCCATCACAAAATCAGCAACCTAAGTCCAGAACAAGAGCAGGGACTGTGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGCAGCCACCTGTCTATGCCGCAGAGACCCCGGGGTGGAGATGTTTTCATCTCGGTT TTCTTCCTGGTTTGTCCTGTTCTTCCAACGGGAGGCAGGGGACGGTGTTTGCACTTTCTT GCTAGGAACCTGAAGCCGCAAAGCTGATGGCATCCTTCTTCCCTGTCCAGGAAAGCGAAG CGTCTGGCTTGGGAACAGAATGCTCTAAGATTTGGAGCTCCTCCCATCCCATTAAAGCCG GGATGCTGTCTGTGAGCAACGGTGCACAATAATAAGTAGTTTCACATTTAACCAATCCTT GGGATCGGCTTTGACAGCTTTCTTGGGCCTGGTGGGCGCGAGGCAGGGGGAGGGGGAGGA GGAGGAGCCCGCAGCCCAAGCGGCAGTGGCGGCAGCGGTGGCTGCGGCGCCCGAGTTTCC CGTAGGGCTCCGCCTCGGAGCGGGCGGCGGTGGAGGAGGAGACTGAGGAGCAGGATGGCG GCCTCGGCCCTGTACGCCTGCACCAAGTGCACCCAGCGCTATCCCTTCGAGGAGCTCTCC CAGGGCCAGCAGCTCTGCAAGGAATGTCGGATTGCGCATCCTATTGTAAAATGTACTTAC TGCAGATCAGAATTTCAACAAGAGAGCAAAACTAACACAATTTGTAAGAAGTGTGCTCAA AATGTGAAGCAGTTTGGCACCCCTAAGCCTTGTCAGTACTGTAACATAATTGCAGCATTT ATTGGTACAAAGTGTCAGCGTTGCACAAATTCAGAAAAAAAATATGGACCACCTCAGACC TGTGAACAGTGCAAACAACAGTGTGCTTTTGATCGAAAGGAGGAGGGAAGAAGAAAGGTT GATGGGAAATTATTATGCTGGCTCTGTACTTTATCATACAAGAGAGTTTTACAGAAGACA AAAGAACAAAGGAAGGGCCTGGGATCCTCACATTCAAATTCCTCTTCTTCATCCCTCACT GAGAAAGACCAGCATCATTCAAAACATCACCACCACCACCATCACCATCACCATCGGCAC GGCAGTAGCCATCACAAAATCAGCAACCTAAGTCCAGAACAAGAGCAGGGACTGTGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-156, + strand, RNAz p=0.994891 | |
| 682-833, + strand, RNAz p=0.622669 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-156, + strand, RNAz p=0.994891 | |
| 682-833, + strand, RNAz p=0.622669 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-323, gnl|bosTau2|chr15 (3664114-3664436) | |
| 1-323, gnl|Hg17|chr11 (95161929-95161609) | |
| 1-323, gnl|Mm7|chr9 (13665377-13665698) | |
| 325-562, gnl|bosTau2|chr15 (3663584-3663826) | |
| 325-562, gnl|Hg17|chr11 (95162422-95162203) | |
| 682-833, gnl|bosTau2|chr2 (76167315-76167163) | |
| 682-833, gnl|canFam2|chr2 (75501746-75501579) | |
| 682-833, gnl|danRer3|chr5 (15512038-15512207) | |
| 682-833, gnl|dasNov1|scaffold_46538 (2282-2430) | |
| 682-833, gnl|echTel1|scaffold_49885 (722-887) | |
| 682-833, gnl|fr1|chrUn (49730362-49730193) | |
| 682-833, gnl|galGal2|chrUn (147041176-147041343) | |
| 682-833, gnl|hg17|chr1 (27744666-27744835) | |
| 682-833, gnl|Hg17|chr1 (27744684-27744836) | |
| 682-833, gnl|loxAfr1|scaffold_6554 (5104-5279) | |
| 682-833, gnl|mm7|chr4 (132294722-132294555) | |
| 682-833, gnl|Mm7|chr4 (132294704-132294552) | |
| 682-833, gnl|monDom2|scaffold_147 (195678-195848) | |
| 682-833, gnl|oryCun1|scaffold_204670 (7890-8060) | |
| 682-833, gnl|panTro1|chr1_random (57391804-57391973) | |
| 682-833, gnl|rheMac2|chr1 (30426749-30426918) | |
| 682-833, gnl|rn3|chr5 (152233659-152233826) | |
| 682-833, gnl|tetNig1|chrUn_random (103570197-103570349) | |
| 682-833, gnl|xenTro1|scaffold_123 (2161315-2161147) | |
| 834-1037, gnl|bosTau2|chr15 (3669521-3669724) | |
| 834-1037, gnl|Hg17|chr11 (95156080-95155877) | |
| 834-1037, gnl|Mm7|chr9 (13670142-13670345) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-323, gnl|bosTau2|chr15 (3664114-3664436) | |
| 1-323, gnl|Hg17|chr11 (95161929-95161609) | |
| 1-323, gnl|Mm7|chr9 (13665377-13665698) | |
| 325-562, gnl|bosTau2|chr15 (3663584-3663826) | |
| 325-562, gnl|Hg17|chr11 (95162422-95162203) | |
| 682-833, gnl|bosTau2|chr2 (76167315-76167163) | |
| 682-833, gnl|canFam2|chr2 (75501746-75501579) | |
| 682-833, gnl|danRer3|chr5 (15512038-15512207) | |
| 682-833, gnl|dasNov1|scaffold_46538 (2282-2430) | |
| 682-833, gnl|echTel1|scaffold_49885 (722-887) | |
| 682-833, gnl|fr1|chrUn (49730362-49730193) | |
| 682-833, gnl|galGal2|chrUn (147041176-147041343) | |
| 682-833, gnl|hg17|chr1 (27744666-27744835) | |
| 682-833, gnl|Hg17|chr1 (27744684-27744836) | |
| 682-833, gnl|loxAfr1|scaffold_6554 (5104-5279) | |
| 682-833, gnl|mm7|chr4 (132294722-132294555) | |
| 682-833, gnl|Mm7|chr4 (132294704-132294552) | |
| 682-833, gnl|monDom2|scaffold_147 (195678-195848) | |
| 682-833, gnl|oryCun1|scaffold_204670 (7890-8060) | |
| 682-833, gnl|panTro1|chr1_random (57391804-57391973) | |
| 682-833, gnl|rheMac2|chr1 (30426749-30426918) | |
| 682-833, gnl|rn3|chr5 (152233659-152233826) | |
| 682-833, gnl|tetNig1|chrUn_random (103570197-103570349) | |
| 682-833, gnl|xenTro1|scaffold_123 (2161315-2161147) | |
| 834-1037, gnl|bosTau2|chr15 (3669521-3669724) | |
| 834-1037, gnl|Hg17|chr11 (95156080-95155877) | |
| 834-1037, gnl|Mm7|chr9 (13670142-13670345) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| tbr (0.154178) |