Ss1.1-mCP1-MI-P-CP1-nzd-b-17-0-UI.s1.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGACCAGGAGTGCCCTGCAGGTCCGGGCTGACGTCGCCGCCCAGATGGCCTTCAGGCTG ACCCCGCTGACCCTCCTGCTGCTGCTGCTGCTGCTGGCTGGGGATAGAGCCTCCTCAACC CTGAATGATGTCAGCCACGTGGATCCAGGGAGCTCGGAAGAAGGGAAAAATGAAGGTGAT ATCGCAAAGGGAGATATTTCCAAGATTGTATCCATTCAACCCACCAAGAGCTCTTCCATC TTCCCAACCAACCTGACCATCGTAACAACCAGTGCCACCCAGCCCGTCAACCAGTCCACC ACTCAACCCATCGAACCAACTACCCTGCCCACCACCAAGCCCTTCTTGACCACTACCGAG CCCTTCTTGCCCACTACCAAGCCCTTCTGCCCAGTGCCTTCCATCTCCTGCCCCGAGGAG AGTCATTCAGCAGAGGCCGTGCTGGGGGAGGCTTTGACCGATTTCTCCGTGAGGCTCTAC CATGCTTTTTCGGCAATAAAGAAGGCAGGGACCAACATGGTCTTCTCCCCATTCAGCATC GCCAGCCTCCTCACCCACGTCCTGCTCGGGGCTGGGGACGAAACCAAGGGAAACCTGGAG AACCTCCTCTCTTACCCCAAAGACTTCACCTGTGTCCACCAGGCCCTGAAGGCCTTCAGG TCCGAAGGCTTCACCTCAGTCTCTCAGATCTTCCACAGCCCAGACCTGGCCATAAGGGAC ACCTTCCTGAATGCCTCTCAGAGCCTGTATGGGAGCAGCCCCAGAACCCTGGGAAATGAC AGTAATGTCAACTTGGAGCTCATCAATGCCTGGGTGGCCGAGAAGACCAACCACAGAATC AATCAGCTGCTGAACAGCCTGCCGTCTGAAACCCGCCTTGTCCTCCTCAATGCCATCTAC CTGAGTGCCAAGTGGAAGGTAATGTTTAATCACAAAAAAACAAGTTTGGAGGCCTTTTAC AGCAAATCCTCTGAGATAAAAGTGCACATGCTGACTAGCAAGAAGTACCCTGTGGCCCAT TTCACAGACCCAACTTTGAAGGCCAAGGTGGGCCGACTGCAGCTGTCTCACAACCTGAGC TTGGTGATCCTGGTGCCCCAGACCTTGAAACACCGTCTGGAAGACATGGAGAAGGCCCTC AGTGCCCCTGTCTTCAAGGCTGTCATGAATAAGCTGGAGTCGACCAAGTTCTATCCCACT CACTTCATGATGCCTCGCATCAAAATAAAGGGCAACCAGGACATGCTGCCAATCATGGAG AAATTGGAATTCTTTGACTTTACCTACGACCTCAACCTGTGTGGGCTGACAGAGGACGCA GATCTGCAGGTTTCTACGATGCAGCACCAGGCCATGCTAGAGCTGATGGAGACGGGGGTG GAGGTGGCAGCAGCCTCGGCCTTCTCTGTGGCCCGCAGTTTGCTGGTCTTTGAAGTGCAG CAGCCCTTCCTTTTCGTGCTCTGGGACCAGCATCACAAGTTCCCTGTCTTCATGGGGCGG GTGTATGACCCCAGGTCCTGAGACCTGCGGGGGGCCGACTAGGGCAAGTCCTTCCCCTCT GGCTTCAGCTCTCTTGGTTGCAGCTCTGGACTTGCCCCCAGCCACCTCCCGCCTCAGGTC TGCCCTCCACCTGAAAGGCTCCCCGGGGGTCTGGTGAGGGGACCTGCTTCTACCATCCCT TCCCTGTGACTCTCTAAAGCACTTTTTGCAGCTTCCTCTGGTACAAATACAGCAGACTCT ACAAATAAAACCTGGCAGACCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGACCAGGAGTGCCCTGCAGGTCCGGGCTGACGTCGCCGCCCAGATGGCCTTCAGGCTG ACCCCGCTGACCCTCCTGCTGCTGCTGCTGCTGCTGGCTGGGGATAGAGCCTCCTCAACC CTGAATGATGTCAGCCACGTGGATCCAGGGAGCTCGGAAGAAGGGAAAAATGAAGGTGAT ATCGCAAAGGGAGATATTTCCAAGATTGTATCCATTCAACCCACCAAGAGCTCTTCCATC TTCCCAACCAACCTGACCATCGTAACAACCAGTGCCACCCAGCCCGTCAACCAGTCCACC ACTCAACCCATCGAACCAACTACCCTGCCCACCACCAAGCCCTTCTTGACCACTACCGAG CCCTTCTTGCCCACTACCAAGCCCTTCTGCCCAGTGCCTTCCATCTCCTGCCCCGAGGAG AGTCATTCAGCAGAGGCCGTGCTGGGGGAGGCTTTGACCGATTTCTCCGTGAGGCTCTAC CATGCTTTTTCGGCAATAAAGAAGGCAGGGACCAACATGGTCTTCTCCCCATTCAGCATC GCCAGCCTCCTCACCCACGTCCTGCTCGGGGCTGGGGACGAAACCAAGGGAAACCTGGAG AACCTCCTCTCTTACCCCAAAGACTTCACCTGTGTCCACCAGGCCCTGAAGGCCTTCAGG TCCGAAGGCTTCACCTCAGTCTCTCAGATCTTCCACAGCCCAGACCTGGCCATAAGGGAC ACCTTCCTGAATGCCTCTCAGAGCCTGTATGGGAGCAGCCCCAGAACCCTGGGAAATGAC AGTAATGTCAACTTGGAGCTCATCAATGCCTGGGTGGCCGAGAAGACCAACCACAGAATC AATCAGCTGCTGAACAGCCTGCCGTCTGAAACCCGCCTTGTCCTCCTCAATGCCATCTAC CTGAGTGCCAAGTGGAAGGTAATGTTTAATCACAAAAAAACAAGTTTGGAGGCCTTTTAC AGCAAATCCTCTGAGATAAAAGTGCACATGCTGACTAGCAAGAAGTACCCTGTGGCCCAT TTCACAGACCCAACTTTGAAGGCCAAGGTGGGCCGACTGCAGCTGTCTCACAACCTGAGC TTGGTGATCCTGGTGCCCCAGACCTTGAAACACCGTCTGGAAGACATGGAGAAGGCCCTC AGTGCCCCTGTCTTCAAGGCTGTCATGAATAAGCTGGAGTCGACCAAGTTCTATCCCACT CACTTCATGATGCCTCGCATCAAAATAAAGGGCAACCAGGACATGCTGCCAATCATGGAG AAATTGGAATTCTTTGACTTTACCTACGACCTCAACCTGTGTGGGCTGACAGAGGACGCA GATCTGCAGGTTTCTACGATGCAGCACCAGGCCATGCTAGAGCTGATGGAGACGGGGGTG GAGGTGGCAGCAGCCTCGGCCTTCTCTGTGGCCCGCAGTTTGCTGGTCTTTGAAGTGCAG CAGCCCTTCCTTTTCGTGCTCTGGGACCAGCATCACAAGTTCCCTGTCTTCATGGGGCGG GTGTATGACCCCAGGTCCTGAGACCTGCGGGGGGCCGACTAGGGCAAGTCCTTCCCCTCT GGCTTCAGCTCTCTTGGTTGCAGCTCTGGACTTGCCCCCAGCCACCTCCCGCCTCAGGTC TGCCCTCCACCTGAAAGGCTCCCCGGGGGTCTGGTGAGGGGACCTGCTTCTACCATCCCT TCCCTGTGACTCTCTAAAGCACTTTTTGCAGCTTCCTCTGGTACAAATACAGCAGACTCT ACAAATAAAACCTGGCAGACCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 421-540, + strand, RNAz p=0.773008 | |
| 814-918, - strand, RNAz p=0.690883 | |
| 1132-1248, - strand, RNAz p=0.516657 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 421-540, + strand, RNAz p=0.773008 | |
| 814-918, - strand, RNAz p=0.690883 | |
| 1132-1248, - strand, RNAz p=0.516657 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 14-115, gnl|bosTau2|chr15 (50536454-50536356) | |
| 14-115, gnl|dasNov1|scaffold_37991 (8838-9173) | |
| 14-115, gnl|echTel1|scaffold_305811 (6346-6683) | |
| 14-115, gnl|hg17|chr11 (57122122-57122471) | |
| 14-115, gnl|Hg17|chr11 (57122290-57122383) | |
| 14-115, gnl|loxAfr1|scaffold_53372 (1225-894) | |
| 14-115, gnl|mm7|chr2 (84618708-84618390) | |
| 14-115, gnl|Mm7|chr2 (84618538-84618439) | |
| 14-115, gnl|monDom2|scaffold_33 (20749420-20749814) | |
| 14-115, gnl|oryCun1|scaffold_205824 (65792-66103) | |
| 14-115, gnl|panTro1|chr9 (58031517-58031866) | |
| 14-115, gnl|rheMac2|chr14 (15817902-15817552) | |
| 14-115, gnl|rn3|chr3 (67874623-67874304) | |
| 138-346, gnl|bosTau2|chr15 (50535339-50535128) | |
| 138-346, gnl|canFam2|chr18 (41646107-41645810) | |
| 138-346, gnl|dasNov1|scaffold_37991 (10403-10727) | |
| 138-346, gnl|echTel1|scaffold_305811 (8006-8363) | |
| 138-346, gnl|hg17|chr11 (57123946-57124309) | |
| 138-346, gnl|Hg17|chr11 (57123951-57124243) | |
| 138-346, gnl|mm7|chr2 (84617344-84616966) | |
| 138-346, gnl|Mm7|chr2 (84617328-84617030) | |
| 138-346, gnl|monDom2|scaffold_33 (20750932-20751300) | |
| 138-346, gnl|panTro1|chr9 (58033419-58033770) | |
| 138-346, gnl|rheMac2|chr14 (15816084-15815721) | |
| 138-346, gnl|rn3|chr3 (67873273-67872895) | |
| 369-569, gnl|bosTau2|chr15 (50535147-50534944) | |
| 369-569, gnl|Hg17|chr11 (57124200-57124427) | |
| 369-569, gnl|Mm7|chr2 (84617049-84616846) | |
| 701-918, gnl|bosTau2|chr15 (50530594-50530377) | |
| 701-918, gnl|Hg17|chr11 (57130057-57130286) | |
| 701-918, gnl|Mm7|chr2 (84614014-84613785) | |
| 1046-1248, gnl|bosTau2|chr15 (50525348-50525146) | |
| 1046-1248, gnl|dasNov1|scaffold_43817 (7360-7188) | |
| 1046-1248, gnl|galGal2|chr5 (14287854-14287687) | |
| 1046-1248, gnl|hg17|chr11 (57135765-57135937) | |
| 1046-1248, gnl|Hg17|chr11 (57135764-57135984) | |
| 1046-1248, gnl|loxAfr1|scaffold_11988 (62235-62062) | |
| 1046-1248, gnl|mm7|chr2 (84611213-84611041) | |
| 1046-1248, gnl|Mm7|chr2 (84611212-84610992) | |
| 1046-1248, gnl|monDom2|scaffold_33 (20761681-20761853) | |
| 1046-1248, gnl|oryCun1|scaffold_182481 (526-698) | |
| 1046-1248, gnl|panTro1|chr9 (58045356-58045528) | |
| 1046-1248, gnl|rheMac2|chr14 (15803798-15803626) | |
| 1046-1248, gnl|rn3|chr3 (67867896-67867724) | |
| 1267-1765, gnl|bosTau2|chr15 (50524198-50523740) | |
| 1267-1765, gnl|Hg17|chr11 (57138376-57138897) | |
| 1267-1765, gnl|Mm7|chr2 (84609544-84609090) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-115, gnl|bosTau2|chr15 (50536454-50536356) | |
| 14-115, gnl|dasNov1|scaffold_37991 (8838-9173) | |
| 14-115, gnl|echTel1|scaffold_305811 (6346-6683) | |
| 14-115, gnl|hg17|chr11 (57122122-57122471) | |
| 14-115, gnl|Hg17|chr11 (57122290-57122383) | |
| 14-115, gnl|loxAfr1|scaffold_53372 (1225-894) | |
| 14-115, gnl|mm7|chr2 (84618708-84618390) | |
| 14-115, gnl|Mm7|chr2 (84618538-84618439) | |
| 14-115, gnl|monDom2|scaffold_33 (20749420-20749814) | |
| 14-115, gnl|oryCun1|scaffold_205824 (65792-66103) | |
| 14-115, gnl|panTro1|chr9 (58031517-58031866) | |
| 14-115, gnl|rheMac2|chr14 (15817902-15817552) | |
| 14-115, gnl|rn3|chr3 (67874623-67874304) | |
| 138-346, gnl|bosTau2|chr15 (50535339-50535128) | |
| 138-346, gnl|canFam2|chr18 (41646107-41645810) | |
| 138-346, gnl|dasNov1|scaffold_37991 (10403-10727) | |
| 138-346, gnl|echTel1|scaffold_305811 (8006-8363) | |
| 138-346, gnl|hg17|chr11 (57123946-57124309) | |
| 138-346, gnl|Hg17|chr11 (57123951-57124243) | |
| 138-346, gnl|mm7|chr2 (84617344-84616966) | |
| 138-346, gnl|Mm7|chr2 (84617328-84617030) | |
| 138-346, gnl|monDom2|scaffold_33 (20750932-20751300) | |
| 138-346, gnl|panTro1|chr9 (58033419-58033770) | |
| 138-346, gnl|rheMac2|chr14 (15816084-15815721) | |
| 138-346, gnl|rn3|chr3 (67873273-67872895) | |
| 369-569, gnl|bosTau2|chr15 (50535147-50534944) | |
| 369-569, gnl|Hg17|chr11 (57124200-57124427) | |
| 369-569, gnl|Mm7|chr2 (84617049-84616846) | |
| 701-918, gnl|bosTau2|chr15 (50530594-50530377) | |
| 701-918, gnl|Hg17|chr11 (57130057-57130286) | |
| 701-918, gnl|Mm7|chr2 (84614014-84613785) | |
| 1046-1248, gnl|bosTau2|chr15 (50525348-50525146) | |
| 1046-1248, gnl|dasNov1|scaffold_43817 (7360-7188) | |
| 1046-1248, gnl|galGal2|chr5 (14287854-14287687) | |
| 1046-1248, gnl|hg17|chr11 (57135765-57135937) | |
| 1046-1248, gnl|Hg17|chr11 (57135764-57135984) | |
| 1046-1248, gnl|loxAfr1|scaffold_11988 (62235-62062) | |
| 1046-1248, gnl|mm7|chr2 (84611213-84611041) | |
| 1046-1248, gnl|Mm7|chr2 (84611212-84610992) | |
| 1046-1248, gnl|monDom2|scaffold_33 (20761681-20761853) | |
| 1046-1248, gnl|oryCun1|scaffold_182481 (526-698) | |
| 1046-1248, gnl|panTro1|chr9 (58045356-58045528) | |
| 1046-1248, gnl|rheMac2|chr14 (15803798-15803626) | |
| 1046-1248, gnl|rn3|chr3 (67867896-67867724) | |
| 1267-1765, gnl|bosTau2|chr15 (50524198-50523740) | |
| 1267-1765, gnl|Hg17|chr11 (57138376-57138897) | |
| 1267-1765, gnl|Mm7|chr2 (84609544-84609090) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| cli (4.27873) | |
| cly (1.32706) | |
| clu (1.19646) | |
| cty (1.14488) | |
| cag (1.05836) | |
| csp (0.967118) | |
| fli (0.811524) | |
| jca (0.797721) | |
| nco (0.646935) | |
| eli (0.607257) | |
| med (0.58126) | |
| cga (0.558191) | |
| cov (0.528611) | |
| pla (0.401016) | |
| ute (0.398353) | |
| elu (0.385356) | |
| eep (0.367692) | |
| ill (0.351185) | |
| ton (0.351) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ese (0.253004) | |
| eru (0.240096) | |
| jej (0.197844) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (4.27873) | |
| cly (1.32706) | |
| clu (1.19646) | |
| cty (1.14488) | |
| cag (1.05836) | |
| csp (0.967118) | |
| fli (0.811524) | |
| jca (0.797721) | |
| nco (0.646935) | |
| eli (0.607257) | |
| med (0.58126) | |
| cga (0.558191) | |
| cov (0.528611) | |
| pla (0.401016) | |
| ute (0.398353) | |
| elu (0.385356) | |
| eep (0.367692) | |
| ill (0.351185) | |
| ton (0.351) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ese (0.253004) | |
| eru (0.240096) | |
| jej (0.197844) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| nbm (0.0993246) | |
| eje (0.0988338) |