Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzd-d-11-0-UI.s1.3

Sequence:


               
               TCCCCACCCCTTTCAATCGGAAGAAAGAAATCCCAAGGTCTGCAAAGGTAAGGGAGATGC
TACAATTCTCGTATTTTTTGCATTGATTTTGTAGGGGGTGGGGCTTGGGTTTGTCTCCCT
CCTTCTCCCCCCTCCAAGATGGGGCTGAACCCCACCTCTGGGCGCTGCAGGGAGAGGCTT
CCCAGGAAATTGGGTGGCCTAGAGAGGGGCGGCTGCTTCCTGGAGGGGAAGCAAGGCAGG
GCTGACCACAGGAGGAACCGAAAGAGGGCCACGGAGGTGAGCTCTGAGTCTCGTTTTTAA
GCTGGGAGGAGAGGTTTAAGCAAGGGGGCTGCGAAAGAGAGAATGGGGGCGTTTGGGCTT
GGGGGGGCGCCGGCAGAAGCCGGTTACTATGGCCTCTGTGGGTTTGCGCCCCCTCCCCCT
CCCCCCATCCCTCCCTTGTTCCCGCCTCCTCCAGTGGCCCCCAGCGCAGTTCTCTTGCCC
GGTGCGGGTATCGGTGGTTTCCCGGCAGCATTGGCACGAGGGGCGGTGGCCGCTGAGGTC
TCCTGGTCTCCGGAGGGCCTGGAATCTCCGCAGAGGCCAGCAAGGGCGAGGAGGCGGCTG
GAGAGACACAGAAAGAACAATTCACAGAGAAATACTCATTATCTCCCTTCGGAGACATTT
CTGCAATTAAAGGGCTGTGGGTGGAGGCACCCAAATCAAGGGAGACCCCGGGAAGCCTGC
TTGAGAATGCCCAGGTCGCCGGCCACTCCCTCGGGAGGAACCCTCGCTCTGCAGGGAGGC
AATTTTGTGGTATTGAACGCGGTAGGTTACAGCGTGTTGGTTTCTGTGCAATAGTGATTC
TGTTACTTGTGTTTCATTGCTCTGGGGGTGTGTGGACTTTGGGGGAGAAGAAAAAATTGC
CATGTGTGTGTCTGATGTGCAAACATTTCAAACTTTCCTGGATCCAAATGTGGTGATTGT
GCAGACGCTGGTTAGCTTGTTGTTGTTTTAGGCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCACCCCTTTCAATCGGAAGAAAGAAATCCCAAGGTCTGCAAAGGTAAGGGAGATGC
TACAATTCTCGTATTTTTTGCATTGATTTTGTAGGGGGTGGGGCTTGGGTTTGTCTCCCT
CCTTCTCCCCCCTCCAAGATGGGGCTGAACCCCACCTCTGGGCGCTGCAGGGAGAGGCTT
CCCAGGAAATTGGGTGGCCTAGAGAGGGGCGGCTGCTTCCTGGAGGGGAAGCAAGGCAGG
GCTGACCACAGGAGGAACCGAAAGAGGGCCACGGAGGTGAGCTCTGAGTCTCGTTTTTAA
GCTGGGAGGAGAGGTTTAAGCAAGGGGGCTGCGAAAGAGAGAATGGGGGCGTTTGGGCTT
GGGGGGGCGCCGGCAGAAGCCGGTTACTATGGCCTCTGTGGGTTTGCGCCCCCTCCCCCT
CCCCCCATCCCTCCCTTGTTCCCGCCTCCTCCAGTGGCCCCCAGCGCAGTTCTCTTGCCC
GGTGCGGGTATCGGTGGTTTCCCGGCAGCATTGGCACGAGGGGCGGTGGCCGCTGAGGTC
TCCTGGTCTCCGGAGGGCCTGGAATCTCCGCAGAGGCCAGCAAGGGCGAGGAGGCGGCTG
GAGAGACACAGAAAGAACAATTCACAGAGAAATACTCATTATCTCCCTTCGGAGACATTT
CTGCAATTAAAGGGCTGTGGGTGGAGGCACCCAAATCAAGGGAGACCCCGGGAAGCCTGC
TTGAGAATGCCCAGGTCGCCGGCCACTCCCTCGGGAGGAACCCTCGCTCTGCAGGGAGGC
AATTTTGTGGTATTGAACGCGGTAGGTTACAGCGTGTTGGTTTCTGTGCAATAGTGATTC
TGTTACTTGTGTTTCATTGCTCTGGGGGTGTGTGGACTTTGGGGGAGAAGAAAAAATTGC
CATGTGTGTGTCTGATGTGCAAACATTTCAAACTTTCCTGGATCCAAATGTGGTGATTGT
GCAGACGCTGGTTAGCTTGTTGTTGTTTTAGGCTTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               3-184, - strand, RNAz p=0.918905
               

               
               304-421, + strand, RNAz p=0.943772
               

               
               574-723, - strand, RNAz p=0.98882

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-184, - strand, RNAz p=0.918905
               

               
               304-421, + strand, RNAz p=0.943772
               

               
               574-723, - strand, RNAz p=0.98882

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               343-468, + strand, RNAmicro p=0.999979
               

               
               348-485, - strand, RNAmicro p=0.999868
               

               
               72-194, + strand, RNAmicro p=0.964906
               

               
               713-836, - strand, RNAmicro p=0.908849

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               343-468, + strand, RNAmicro p=0.999979
               

               
               348-485, - strand, RNAmicro p=0.999868
               

               
               72-194, + strand, RNAmicro p=0.964906
               

               
               713-836, - strand, RNAmicro p=0.908849

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-992, gnl|bosTau2|chr19 (31222099-31221113)
               

               
               3-992, gnl|Hg17|chr17 (44036888-44035889)
               

               
               3-992, gnl|Mm7|chr11 (96402003-96402969)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-992, gnl|bosTau2|chr19 (31222099-31221113)
               

               
               3-992, gnl|Hg17|chr17 (44036888-44035889)
               

               
               3-992, gnl|Mm7|chr11 (96402003-96402969)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               eje (0.0988338)

	3-184, - strand, RNAz p=0.918905
	304-421, + strand, RNAz p=0.943772
	574-723, - strand, RNAz p=0.98882

	343-468, + strand, RNAmicro p=0.999979
	348-485, - strand, RNAmicro p=0.999868
	72-194, + strand, RNAmicro p=0.964906
	713-836, - strand, RNAmicro p=0.908849

	3-992, gnl\|bosTau2\|chr19 (31222099-31221113)
	3-992, gnl\|Hg17\|chr17 (44036888-44035889)
	3-992, gnl\|Mm7\|chr11 (96402003-96402969)