Ss1.1-mCP1-MI-P-CP1-nzd-f-18-0-UI.s1.3
|
CGCCCCGAAACCTGTGGCTGGGAGGACAGAGGCCACCAAGCCCGAGGTCACCAAGACTGA
GGCCGCCAAGCCTGAGACCACCAAGCCTGTGGCCGCCAAGCCTGAGACCGCCAAGCCTGT
GGCCGCCAAACCCGAGGCCGCCAAGCCTGTGGCTGCCAGGCCTGAGGCTGCGAAGGTGGC
CGCGAAGCCCTCAGCAGCAAAGCCAGCCTCTGCCAGACCCCCAGCTGCTGCCAAACCCGT
GGCTGCAAAGCCCGAGGCCCCCAGGCCCCAGGCAGCCAAACTGGCCCCTGCCAAGCCAGC
TACCCCCAAGCCCGTGGCGAAGGCCCCCCGGGAGGTCCATGTGTCTGAGATCACGGAGAA
CAGTGCCAAGCTCCACTGGGAGCGGCCCGAGCCCCCCAGCCCTTACTTCTATGACCTCAC
CGTCACCTCGGCCCAGGATCAGTCCCTGGTTCTGAAGCAGAACCTCACGGTCCCCGACCG
CGTCATCGGCGGCCTGCTCGCGGGGCAGACGTACCATGTCTCCGTGGTCTGCTACCTGAA
GTCCCAGGTCAGAGCCACCTACCACGGCAGCTTCAGTACAAAGAGAACTCAGCCTCCACC
TCCACAAACAGCGAGGTCAGCTTCCAGTTCAACCATCAATCTCATGGTGAACACGGAGCC
CTTGGCCGGGAGTGAAGCAGATGTATGTAAGTTGCCCAAAGATGGAGGAACTTGCAGGAA
ATTTATCATAAAATGGTACCATGACGCGGTGACTGGAAACTGTGCAAGATTCTGGTATGG
AGGTTGTGGTGGAAATGAAAACAGATTTGATTCGCAGGAAGAATGTGAAAAGGTTTGCTC
TCCTGTGCTCGTCAAACCCAAAGTCATAGCTGCAATTGGGACCTAAGCGTGGCCCCCGTG
ACACATACCTCTTGAGGAAGAAGGAGGCAGCCACTGCAAGTCGTCTCTGTAGAAGCCCTC
GGTGTAGACCGCCTTGCACTGTGCCGTTTCATGCTTTGAGTTACACTCGGACTTGGGAGG
AAACGTCTGCCGCATGACTATCCATATGGTGCTAACTGTGTCTGTGGACCCAGCGCTCTC
TGTCTCTAGGCAGTTACATCGTATACTTTGAACGTTGCGCAACAGTTACCCACTGCTGGT
GTTTCTGTGAATATCCCCATAAAGTCAGATTCCCTCTGGAGTTTCACCTTATGCCTGTCT
CAGGCAGGTGTAAGGTCTAGAAAATAACCCCCAACTTCACAGCTACTCTGTATCCTTCCG
CTTGGTTCATTCCTGCCCCGCCTTTCATTAAGCATGATTTTAGATGGAAAGCCTGTTGTA
TGGAGAATAAGCAAGAGTCCACGTGTTCATGTACCACCAATTTCCTGGATTCGATTGCGA
GCTCATTTTCTTTTTTCTAAAGCTTCTAAGGAACAATCTAGGGAGGCAGAAGCCAACTCC
CTTAATCTTTGTGCGCCATTGCGGGACCAATGCCTTCATTAAAGGATGAAAAGAAAGTCA
TAATAGAGAATATTTTTGGCATTCCTCTAATGTTGTGCGTGTGTTTCATTTTTTAATTTT
TTTTTGTGCAGGGGGGTTTAATTTTAATTTTAAAATTTTTAGGAAATTTATACAAAGGAA
ACTTTTTAATAAAGTATATTGAAAGTGTAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCCCGAAACCTGTGGCTGGGAGGACAGAGGCCACCAAGCCCGAGGTCACCAAGACTGA
GGCCGCCAAGCCTGAGACCACCAAGCCTGTGGCCGCCAAGCCTGAGACCGCCAAGCCTGT
GGCCGCCAAACCCGAGGCCGCCAAGCCTGTGGCTGCCAGGCCTGAGGCTGCGAAGGTGGC
CGCGAAGCCCTCAGCAGCAAAGCCAGCCTCTGCCAGACCCCCAGCTGCTGCCAAACCCGT
GGCTGCAAAGCCCGAGGCCCCCAGGCCCCAGGCAGCCAAACTGGCCCCTGCCAAGCCAGC
TACCCCCAAGCCCGTGGCGAAGGCCCCCCGGGAGGTCCATGTGTCTGAGATCACGGAGAA
CAGTGCCAAGCTCCACTGGGAGCGGCCCGAGCCCCCCAGCCCTTACTTCTATGACCTCAC
CGTCACCTCGGCCCAGGATCAGTCCCTGGTTCTGAAGCAGAACCTCACGGTCCCCGACCG
CGTCATCGGCGGCCTGCTCGCGGGGCAGACGTACCATGTCTCCGTGGTCTGCTACCTGAA
GTCCCAGGTCAGAGCCACCTACCACGGCAGCTTCAGTACAAAGAGAACTCAGCCTCCACC
TCCACAAACAGCGAGGTCAGCTTCCAGTTCAACCATCAATCTCATGGTGAACACGGAGCC
CTTGGCCGGGAGTGAAGCAGATGTATGTAAGTTGCCCAAAGATGGAGGAACTTGCAGGAA
ATTTATCATAAAATGGTACCATGACGCGGTGACTGGAAACTGTGCAAGATTCTGGTATGG
AGGTTGTGGTGGAAATGAAAACAGATTTGATTCGCAGGAAGAATGTGAAAAGGTTTGCTC
TCCTGTGCTCGTCAAACCCAAAGTCATAGCTGCAATTGGGACCTAAGCGTGGCCCCCGTG
ACACATACCTCTTGAGGAAGAAGGAGGCAGCCACTGCAAGTCGTCTCTGTAGAAGCCCTC
GGTGTAGACCGCCTTGCACTGTGCCGTTTCATGCTTTGAGTTACACTCGGACTTGGGAGG
AAACGTCTGCCGCATGACTATCCATATGGTGCTAACTGTGTCTGTGGACCCAGCGCTCTC
TGTCTCTAGGCAGTTACATCGTATACTTTGAACGTTGCGCAACAGTTACCCACTGCTGGT
GTTTCTGTGAATATCCCCATAAAGTCAGATTCCCTCTGGAGTTTCACCTTATGCCTGTCT
CAGGCAGGTGTAAGGTCTAGAAAATAACCCCCAACTTCACAGCTACTCTGTATCCTTCCG
CTTGGTTCATTCCTGCCCCGCCTTTCATTAAGCATGATTTTAGATGGAAAGCCTGTTGTA
TGGAGAATAAGCAAGAGTCCACGTGTTCATGTACCACCAATTTCCTGGATTCGATTGCGA
GCTCATTTTCTTTTTTCTAAAGCTTCTAAGGAACAATCTAGGGAGGCAGAAGCCAACTCC
CTTAATCTTTGTGCGCCATTGCGGGACCAATGCCTTCATTAAAGGATGAAAAGAAAGTCA
TAATAGAGAATATTTTTGGCATTCCTCTAATGTTGTGCGTGTGTTTCATTTTTTAATTTT
TTTTTGTGCAGGGGGGTTTAATTTTAATTTTAAAATTTTTAGGAAATTTATACAAAGGAA
ACTTTTTAATAAAGTATATTGAAAGTGTAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-300, gnl|bosTau2|chr3 (83852272-83851974) |
|
2-300, gnl|Mm7|chr1 (90680182-90679684) |
| |
|
23-293, gnl|bosTau2|chr3 (83852206-83851933) |
|
23-293, gnl|Mm7|chr1 (90679996-90679643) |
| |
|
312-579, gnl|bosTau2|chr3 (83850136-83849869) |
|
312-579, gnl|canFam2|chr25 (51005965-51006228) |
|
312-579, gnl|dasNov1|scaffold_2040 (19684-19951) |
|
312-579, gnl|echTel1|scaffold_226074 (1028-1291) |
|
312-579, gnl|galGal2|chr7 (4774112-4773852) |
|
312-579, gnl|hg17|chr2 (238025257-238025520) |
|
312-579, gnl|Hg17|chr2 (238025538-238025271) |
|
312-579, gnl|loxAfr1|scaffold_12620 (34984-34727) |
|
312-579, gnl|mm7|chr1 (90677433-90677698) |
|
312-579, gnl|Mm7|chr1 (90677713-90677449) |
|
312-579, gnl|monDom2|scaffold_161 (186849-186593) |
|
312-579, gnl|oryCun1|scaffold_123039 (4183-4440) |
|
312-579, gnl|panTro1|chr13 (128965323-128965586) |
|
312-579, gnl|rheMac2|chr12 (101190401-101190664) |
|
312-579, gnl|rn3|chr9 (90177070-90177335) |
|
312-579, gnl|xenTro1|scaffold_49 (2380748-2381014) |
| |
|
840-1648, gnl|bosTau2|chr3 (83837328-83836520) |
|
840-1648, gnl|Hg17|chr2 (238015471-238014658) |
|
840-1648, gnl|Mm7|chr1 (90671637-90670875) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-300, gnl|bosTau2|chr3 (83852272-83851974) |
|
2-300, gnl|Mm7|chr1 (90680182-90679684) |
| |
|
23-293, gnl|bosTau2|chr3 (83852206-83851933) |
|
23-293, gnl|Mm7|chr1 (90679996-90679643) |
| |
|
312-579, gnl|bosTau2|chr3 (83850136-83849869) |
|
312-579, gnl|canFam2|chr25 (51005965-51006228) |
|
312-579, gnl|dasNov1|scaffold_2040 (19684-19951) |
|
312-579, gnl|echTel1|scaffold_226074 (1028-1291) |
|
312-579, gnl|galGal2|chr7 (4774112-4773852) |
|
312-579, gnl|hg17|chr2 (238025257-238025520) |
|
312-579, gnl|Hg17|chr2 (238025538-238025271) |
|
312-579, gnl|loxAfr1|scaffold_12620 (34984-34727) |
|
312-579, gnl|mm7|chr1 (90677433-90677698) |
|
312-579, gnl|Mm7|chr1 (90677713-90677449) |
|
312-579, gnl|monDom2|scaffold_161 (186849-186593) |
|
312-579, gnl|oryCun1|scaffold_123039 (4183-4440) |
|
312-579, gnl|panTro1|chr13 (128965323-128965586) |
|
312-579, gnl|rheMac2|chr12 (101190401-101190664) |
|
312-579, gnl|rn3|chr9 (90177070-90177335) |
|
312-579, gnl|xenTro1|scaffold_49 (2380748-2381014) |
| |
|
840-1648, gnl|bosTau2|chr3 (83837328-83836520) |
|
840-1648, gnl|Hg17|chr2 (238015471-238014658) |
|
840-1648, gnl|Mm7|chr1 (90671637-90670875) |
|
fat (1.76913) |
|
nep (1.65532) |
|
jca (1.59544) |
|
eye (0.852515) |
|
ski (0.586941) |
|
cga (0.558191) |
|
mcp (0.511945) |
|
bla (0.497389) |
|
csk (0.422238) |
|
nca (0.410621) |
|
ste (0.405625) |
|
med (0.348756) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
eje (0.296501) |
|
ldo (0.291008) |
|
spl (0.286369) |
|
ova (0.258264) |
|
ese (0.253004) |
|
cly (0.241284) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
rec (0.17307) |
|
cut (0.169924) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cst (0.140036) |
|
che (0.136314) |
|
ssp (0.13552) |
|
tra (0.123092) |
|
eru (0.120048) |
|
fat (1.76913) |
|
nep (1.65532) |
|
jca (1.59544) |
|
eye (0.852515) |
|
ski (0.586941) |
|
cga (0.558191) |
|
mcp (0.511945) |
|
bla (0.497389) |
|
csk (0.422238) |
|
nca (0.410621) |
|
ste (0.405625) |
|
med (0.348756) |
|
tbr (0.308356) |
|
sme (0.305437) |
|
eje (0.296501) |
|
ldo (0.291008) |
|
spl (0.286369) |
|
ova (0.258264) |
|
ese (0.253004) |
|
cly (0.241284) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
col (0.195008) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
rec (0.17307) |
|
cut (0.169924) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cst (0.140036) |
|
che (0.136314) |
|
ssp (0.13552) |
|
tra (0.123092) |
|
eru (0.120048) |
