Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzd-i-14-0-UI.s1.3

Sequence:


               
               ACCGCCCGCGGCGGCCGCCGGCACTCCCGCTGCAGCGCGCCGGGTCCTGGCCGCGCCCCT
GCCGAGCGCCGCACAGCACAGCAGCCGAGACCCTCGCTCGTTCCCTGGGCGGCAGCGCGG
GCGCCGCACCGACCATGGCGGGCATCGCGGCCAAGTTGGCTAAAGACCGGGAGGCGGCCG
AGGGACTGGGCTCGCACGAGAGGGCGGTCAAGTACCTCAACCAGGACTATGCGGAGCTGC
GGGACCAGTGCCTGGAGGCCGGGGCGCTCTTCCAGGACCCCTCCTTCCCGGCCCTCCCGT
CTTCCCTGGGCTTCAAGGAGTTGGGTCCGTACTCCGGCAAGACCCGGGGCATCGAGTGGA
AGCGGCCCACGGAGATCTGCGACAATCCCCAGTTTATTATTGGAGGAGCTACCCGCACAG
ACATCTGCCAAGGAGCCCTGGGTGACTGCTGGCTGCTGGCAGCCATCGCCTCCCTCACCT
TGAACGAAGAGGTCCTGGCTCGAGTCGTCCCCCTGGACCAGAGCTTCCAGGAGAACTACG
CGGGGATCTTCCGCTTCCAGTTCTGGCAGTACGGCGAATGGGTGGAGGTGGTGGTGGATG
ACAGGCTGCCCACCAAGGACGGGGAGCTGCTGTTCGTGCACTCGGCGGAGGGGAGTGAGT
TCTGGAGCGCACTGCTGGAGAAGGCCTATGCCAAGATCAATGGGTGTTATGAAGCTCTCT
CAGGGGGTGCCACCACCGAGGGCTTCGAGGACTTCACTGGAGGCATCGCTGAGTGGTATG
AGCTCAGGAAGGCCCCTCCCAACTTGTTCAAGATCATCCAGAAGGCTCTGCAGAAAGGCT
CTCTCCTTGGCTGCTCCATTGATATCACCAGCGCCGCGGACTCGGAGGCCGTGACGTTCC
AGAAGCTGGTCAAGGGACACGCGTACTCGGTCACCGGCGCCGAGGAGGTTGAAAGCAGAG
GAAGCCTGCAGAAGCTGATCCGCATCCGGAATCCCTGGGGAGAGGTGGAGTGGACCGGGC
AGTGGAACGACAACTGCCCAAACTGGAACACTGTCGACCCAGAGGTGAGGGAAAGCCTGA
CCAGACGGCATGAAGATGGAGAATTCTGGATGTCTTTCAGCGACTTCCTGAGGCACTATT
CGCGCTTGGAGATCTGCAACCTGACCCCCGACACACTCACCAGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGCCCGCGGCGGCCGCCGGCACTCCCGCTGCAGCGCGCCGGGTCCTGGCCGCGCCCCT
GCCGAGCGCCGCACAGCACAGCAGCCGAGACCCTCGCTCGTTCCCTGGGCGGCAGCGCGG
GCGCCGCACCGACCATGGCGGGCATCGCGGCCAAGTTGGCTAAAGACCGGGAGGCGGCCG
AGGGACTGGGCTCGCACGAGAGGGCGGTCAAGTACCTCAACCAGGACTATGCGGAGCTGC
GGGACCAGTGCCTGGAGGCCGGGGCGCTCTTCCAGGACCCCTCCTTCCCGGCCCTCCCGT
CTTCCCTGGGCTTCAAGGAGTTGGGTCCGTACTCCGGCAAGACCCGGGGCATCGAGTGGA
AGCGGCCCACGGAGATCTGCGACAATCCCCAGTTTATTATTGGAGGAGCTACCCGCACAG
ACATCTGCCAAGGAGCCCTGGGTGACTGCTGGCTGCTGGCAGCCATCGCCTCCCTCACCT
TGAACGAAGAGGTCCTGGCTCGAGTCGTCCCCCTGGACCAGAGCTTCCAGGAGAACTACG
CGGGGATCTTCCGCTTCCAGTTCTGGCAGTACGGCGAATGGGTGGAGGTGGTGGTGGATG
ACAGGCTGCCCACCAAGGACGGGGAGCTGCTGTTCGTGCACTCGGCGGAGGGGAGTGAGT
TCTGGAGCGCACTGCTGGAGAAGGCCTATGCCAAGATCAATGGGTGTTATGAAGCTCTCT
CAGGGGGTGCCACCACCGAGGGCTTCGAGGACTTCACTGGAGGCATCGCTGAGTGGTATG
AGCTCAGGAAGGCCCCTCCCAACTTGTTCAAGATCATCCAGAAGGCTCTGCAGAAAGGCT
CTCTCCTTGGCTGCTCCATTGATATCACCAGCGCCGCGGACTCGGAGGCCGTGACGTTCC
AGAAGCTGGTCAAGGGACACGCGTACTCGGTCACCGGCGCCGAGGAGGTTGAAAGCAGAG
GAAGCCTGCAGAAGCTGATCCGCATCCGGAATCCCTGGGGAGAGGTGGAGTGGACCGGGC
AGTGGAACGACAACTGCCCAAACTGGAACACTGTCGACCCAGAGGTGAGGGAAAGCCTGA
CCAGACGGCATGAAGATGGAGAATTCTGGATGTCTTTCAGCGACTTCCTGAGGCACTATT
CGCGCTTGGAGATCTGCAACCTGACCCCCGACACACTCACCAGTGACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30749456|pdb|1MDW|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30749456|pdb|1MDW|B

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-372, - strand, RNAz p=0.51926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-372, - strand, RNAz p=0.51926

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               3-372, gnl|bosTau2|chr16 (13899749-13900109)
               

               
               3-372, gnl|Hg17|chr1 (220206954-220207315)
               

               
               3-372, gnl|Mm7|chr1 (182502273-182501912)
               


               
               536-695, gnl|bosTau2|chr15 (35554958-35555117)
               

               
               536-695, gnl|canFam2|chr21 (24644280-24644121)
               

               
               536-695, gnl|danRer3|chr21 (14796611-14796763)
               

               
               536-695, gnl|dasNov1|scaffold_206650 (4277-4118)
               

               
               536-695, gnl|fr1|chrUn (102817541-102817693)
               

               
               536-695, gnl|galGal2|chr1_random (213945-213786)
               

               
               536-695, gnl|hg17|chr11 (76501275-76501434)
               

               
               536-695, gnl|Hg17|chr11 (76501333-76501492)
               

               
               536-695, gnl|loxAfr1|scaffold_32479 (11017-10860)
               

               
               536-695, gnl|mm7|chr7 (94167880-94167721)
               

               
               536-695, gnl|Mm7|chr7 (94167820-94167661)
               

               
               536-695, gnl|monDom2|scaffold_46 (13339406-13339249)
               

               
               536-695, gnl|oryCun1|scaffold_199253 (150252-150411)
               

               
               536-695, gnl|panTro1|chr9 (77797116-77797275)
               

               
               536-695, gnl|rheMac2|chr14 (75292561-75292720)
               

               
               536-695, gnl|rn3|chr1 (155458075-155457916)
               

               
               536-695, gnl|tetNig1|chrUn_random (29627015-29627167)
               

               
               536-695, gnl|xenTro1|scaffold_694 (650125-650284)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-372, gnl|bosTau2|chr16 (13899749-13900109)
               

               
               3-372, gnl|Hg17|chr1 (220206954-220207315)
               

               
               3-372, gnl|Mm7|chr1 (182502273-182501912)
               


               
               536-695, gnl|bosTau2|chr15 (35554958-35555117)
               

               
               536-695, gnl|canFam2|chr21 (24644280-24644121)
               

               
               536-695, gnl|danRer3|chr21 (14796611-14796763)
               

               
               536-695, gnl|dasNov1|scaffold_206650 (4277-4118)
               

               
               536-695, gnl|fr1|chrUn (102817541-102817693)
               

               
               536-695, gnl|galGal2|chr1_random (213945-213786)
               

               
               536-695, gnl|hg17|chr11 (76501275-76501434)
               

               
               536-695, gnl|Hg17|chr11 (76501333-76501492)
               

               
               536-695, gnl|loxAfr1|scaffold_32479 (11017-10860)
               

               
               536-695, gnl|mm7|chr7 (94167880-94167721)
               

               
               536-695, gnl|Mm7|chr7 (94167820-94167661)
               

               
               536-695, gnl|monDom2|scaffold_46 (13339406-13339249)
               

               
               536-695, gnl|oryCun1|scaffold_199253 (150252-150411)
               

               
               536-695, gnl|panTro1|chr9 (77797116-77797275)
               

               
               536-695, gnl|rheMac2|chr14 (75292561-75292720)
               

               
               536-695, gnl|rn3|chr1 (155458075-155457916)
               

               
               536-695, gnl|tetNig1|chrUn_random (29627015-29627167)
               

               
               536-695, gnl|xenTro1|scaffold_694 (650125-650284)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	3-372, gnl\|bosTau2\|chr16 (13899749-13900109)
	3-372, gnl\|Hg17\|chr1 (220206954-220207315)
	3-372, gnl\|Mm7\|chr1 (182502273-182501912)

	536-695, gnl\|bosTau2\|chr15 (35554958-35555117)
	536-695, gnl\|canFam2\|chr21 (24644280-24644121)
	536-695, gnl\|danRer3\|chr21 (14796611-14796763)
	536-695, gnl\|dasNov1\|scaffold_206650 (4277-4118)
	536-695, gnl\|fr1\|chrUn (102817541-102817693)
	536-695, gnl\|galGal2\|chr1_random (213945-213786)
	536-695, gnl\|hg17\|chr11 (76501275-76501434)
	536-695, gnl\|Hg17\|chr11 (76501333-76501492)
	536-695, gnl\|loxAfr1\|scaffold_32479 (11017-10860)
	536-695, gnl\|mm7\|chr7 (94167880-94167721)
	536-695, gnl\|Mm7\|chr7 (94167820-94167661)
	536-695, gnl\|monDom2\|scaffold_46 (13339406-13339249)
	536-695, gnl\|oryCun1\|scaffold_199253 (150252-150411)
	536-695, gnl\|panTro1\|chr9 (77797116-77797275)
	536-695, gnl\|rheMac2\|chr14 (75292561-75292720)
	536-695, gnl\|rn3\|chr1 (155458075-155457916)
	536-695, gnl\|tetNig1\|chrUn_random (29627015-29627167)
	536-695, gnl\|xenTro1\|scaffold_694 (650125-650284)