Ss1.1-mCP1-MI-P-CP1-nzd-n-12-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCCGCGGTGCGCAGGCGCCGCCGTCGGTGGGTCCGGGTTCGGCTGCTTGAGAGATCC TGAGACACCCCCGCCCCCCAGGCTTTGTCTCTTCCCATCTCAAGATGGACAACAAGAAGC GCCTGGCCTATGCCATCATCCGCTTCCTGCATGACCAGCTCCGGCACGGGGGGCTTTCAC CCGACGCCCAGGAAAGCTTGGAAGTTGCAATCCAGTGCCTGGAGACCGCTTTTGGGGTGA CGGTGGAGGATAGCGACCTCGCACTCCCTCAGACTCTCTCAGAGATATTTGAAGCAGCTG CCTCAGGCAAGGAAGTGCCGCAGGATCTGAGGAGCCCCCAGCAAACCCCACCTTCAGAGG AGGACTCCGCCGAGGCAGAGCGCCTCAAAACTGAAGGAAATGAACAGATGAAAGTAGAAA ACTTTGAGGCCGCCGTGCACTTCTACGGGAAAGCCATCGAGCTGAACCCCTCCAATGCCG TCTACTTCTGTAACAGAGCTGCAGCCTACAGCAAACTGGGCAACTACGCAGGCGCCGTAC AGGACTGTGAGCGAGCCATCTGCATAGACCCGTCCTATAGCAAGGCCTACGGCAGGATGG GCCTGGCACTGTCCAGCCTGAACAAGCACACAGAGGCCGTGGCCTACTATAGGAAGGCCT TGGAGCTGGACCCCGACAATGAGACCTACAAGTCCAACCTCAAGGTCGCAGAGCTGAGGC TGAGAGAGGCGCCCAGCCCTACGGGAGGTGTTGGCAGCTTTGACATCGCAGGCCTGCTGA ACAACCCGAGCTTTATGAGCATGGCATCAAATCTAATGAATAATCCCCAGGTTCAACAGC TCATGTCTGGCATGATTTCGGGTGGCCACAACCCCCTGGGGACTCCGGGCACCAGTCCCT CGCAGAACGACCTGGCCAGTCTCATCCAGGCGGGCCAGCAGTTCGCTCAGCAGATGCAGC AGCAGAACCCAGAGTTGATAGAACAGCTACGAAGTCAGATCCGCAGTCGGACCCCCAGTG CCAGCAACGATGACCAGCAGGAGTGATGGCCTCTGTCCCAGTGCCATCGGGTCCTGCGTG GCCGACCAGAAGCCTTCTTGTGTTCTGCCGTCTTCTCCCATTGGACTGCCCACGAGAGAA AAAGAAATTGGACCTGCATGTTAAGACAGATTTTTATTATTATTATTTTTTTTTGCCTTC ACCCTTCTCTCCCTTTTTGTACTCTCATGGCCCCCAGACCTCTCTCGAAACAGAGCCAGC AAGCTGTGAGTGCAGACCAGCATCCATCTCCCTCCAACACCCCCCCAAACCTAGTGACTA AAGTGTTTTCTAAAATATTCCCAGGGTGGGGTAGTCTTCTCACTGCTGTCGGAGAAGCAG CCTGTGGGGATGCCGTGGCCCTGCTGCCCTTCCTGCAGCCCCGACCCCTTGGTCTGGCCT CGGGCCTCCCAGCCCTTCCTGAGTCGACTTTGGCCACCCCAGCTCTGACAAGCTCACTGC CAGCCACACCCGGCCCTAGGACCCGGGTTCGTGCATGAGGAACTCAGTTGCAGGTTCCTA GACAACGGTTCCGTCGTCCAGCGCCCAGCAGGGCCAGGGGAATGTCCTGGGTGCACAGGA CGGTTTTTTTTCCTGTTGCGTGTTTTGATGGATGCGTGTCTGATCTACATCCTCTTTTCC CAGTGCTCGAGACCGACAGACTGCAAGGGGCACCCTCATGGCCCCATCCCAGCCTATCCC TGTGTCCCAGACACTGCCCTCTTGCCTCCAGGTGGTCCCACTGACCCAACGCATGGCATC CTCAGCAGGCTCTCATTCTGTTCGGGGTGGCAGCTGCAGGGCCCTGGTGCCACCTGCCCT GGGAGATTTCCAGGCAGCCATGGAAGCAGCTTCTGGAGCAGGGGTGGGTCAGCCACTGTG GATGTCCCCTGAGCCCTGGCCTGGGCAGGGGCAGGGTGGGGAGGAGATGTCGCTAGCGTC ACTGCACCCATGCCCATATTGGCAGTGGGATCACCTGAGGCTCCTGGTGGTGGGGGGGCG TCTGTGAGGTAGACCCATCGCCATGTGTCGTAGGTAACTCTAGGGAGACAGCCACCTGCG CTCTGCACGCGTCCGGAGAGATATGTCCTGATTCTAGAGTGCTAGCCATGGTGACAAGCA TAATGTGTGGGGAATAAATAGACATCGTGACCTCTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCCGCGGTGCGCAGGCGCCGCCGTCGGTGGGTCCGGGTTCGGCTGCTTGAGAGATCC TGAGACACCCCCGCCCCCCAGGCTTTGTCTCTTCCCATCTCAAGATGGACAACAAGAAGC GCCTGGCCTATGCCATCATCCGCTTCCTGCATGACCAGCTCCGGCACGGGGGGCTTTCAC CCGACGCCCAGGAAAGCTTGGAAGTTGCAATCCAGTGCCTGGAGACCGCTTTTGGGGTGA CGGTGGAGGATAGCGACCTCGCACTCCCTCAGACTCTCTCAGAGATATTTGAAGCAGCTG CCTCAGGCAAGGAAGTGCCGCAGGATCTGAGGAGCCCCCAGCAAACCCCACCTTCAGAGG AGGACTCCGCCGAGGCAGAGCGCCTCAAAACTGAAGGAAATGAACAGATGAAAGTAGAAA ACTTTGAGGCCGCCGTGCACTTCTACGGGAAAGCCATCGAGCTGAACCCCTCCAATGCCG TCTACTTCTGTAACAGAGCTGCAGCCTACAGCAAACTGGGCAACTACGCAGGCGCCGTAC AGGACTGTGAGCGAGCCATCTGCATAGACCCGTCCTATAGCAAGGCCTACGGCAGGATGG GCCTGGCACTGTCCAGCCTGAACAAGCACACAGAGGCCGTGGCCTACTATAGGAAGGCCT TGGAGCTGGACCCCGACAATGAGACCTACAAGTCCAACCTCAAGGTCGCAGAGCTGAGGC TGAGAGAGGCGCCCAGCCCTACGGGAGGTGTTGGCAGCTTTGACATCGCAGGCCTGCTGA ACAACCCGAGCTTTATGAGCATGGCATCAAATCTAATGAATAATCCCCAGGTTCAACAGC TCATGTCTGGCATGATTTCGGGTGGCCACAACCCCCTGGGGACTCCGGGCACCAGTCCCT CGCAGAACGACCTGGCCAGTCTCATCCAGGCGGGCCAGCAGTTCGCTCAGCAGATGCAGC AGCAGAACCCAGAGTTGATAGAACAGCTACGAAGTCAGATCCGCAGTCGGACCCCCAGTG CCAGCAACGATGACCAGCAGGAGTGATGGCCTCTGTCCCAGTGCCATCGGGTCCTGCGTG GCCGACCAGAAGCCTTCTTGTGTTCTGCCGTCTTCTCCCATTGGACTGCCCACGAGAGAA AAAGAAATTGGACCTGCATGTTAAGACAGATTTTTATTATTATTATTTTTTTTTGCCTTC ACCCTTCTCTCCCTTTTTGTACTCTCATGGCCCCCAGACCTCTCTCGAAACAGAGCCAGC AAGCTGTGAGTGCAGACCAGCATCCATCTCCCTCCAACACCCCCCCAAACCTAGTGACTA AAGTGTTTTCTAAAATATTCCCAGGGTGGGGTAGTCTTCTCACTGCTGTCGGAGAAGCAG CCTGTGGGGATGCCGTGGCCCTGCTGCCCTTCCTGCAGCCCCGACCCCTTGGTCTGGCCT CGGGCCTCCCAGCCCTTCCTGAGTCGACTTTGGCCACCCCAGCTCTGACAAGCTCACTGC CAGCCACACCCGGCCCTAGGACCCGGGTTCGTGCATGAGGAACTCAGTTGCAGGTTCCTA GACAACGGTTCCGTCGTCCAGCGCCCAGCAGGGCCAGGGGAATGTCCTGGGTGCACAGGA CGGTTTTTTTTCCTGTTGCGTGTTTTGATGGATGCGTGTCTGATCTACATCCTCTTTTCC CAGTGCTCGAGACCGACAGACTGCAAGGGGCACCCTCATGGCCCCATCCCAGCCTATCCC TGTGTCCCAGACACTGCCCTCTTGCCTCCAGGTGGTCCCACTGACCCAACGCATGGCATC CTCAGCAGGCTCTCATTCTGTTCGGGGTGGCAGCTGCAGGGCCCTGGTGCCACCTGCCCT GGGAGATTTCCAGGCAGCCATGGAAGCAGCTTCTGGAGCAGGGGTGGGTCAGCCACTGTG GATGTCCCCTGAGCCCTGGCCTGGGCAGGGGCAGGGTGGGGAGGAGATGTCGCTAGCGTC ACTGCACCCATGCCCATATTGGCAGTGGGATCACCTGAGGCTCCTGGTGGTGGGGGGGCG TCTGTGAGGTAGACCCATCGCCATGTGTCGTAGGTAACTCTAGGGAGACAGCCACCTGCG CTCTGCACGCGTCCGGAGAGATATGTCCTGATTCTAGAGTGCTAGCCATGGTGACAAGCA TAATGTGTGGGGAATAAATAGACATCGTGACCTCTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 77-204, gnl|bosTau2|chr7 (18350735-18350609) | |
| 77-204, gnl|canFam2|chr20 (59582103-59581998) | |
| 77-204, gnl|danRer3|chr10 (1142425-1142308) | |
| 77-204, gnl|dasNov1|scaffold_275806 (246-350) | |
| 77-204, gnl|echTel1|scaffold_207961 (3328-3223) | |
| 77-204, gnl|fr1|chrUn (58423583-58423685) | |
| 77-204, gnl|galGal2|chrUn (147737551-147737656) | |
| 77-204, gnl|hg17|chr19 (2719968-2720077) | |
| 77-204, gnl|Hg17|chr19 (2720094-2719967) | |
| 77-204, gnl|loxAfr1|scaffold_25742 (18021-17917) | |
| 77-204, gnl|mm7|chr10 (80844114-80844219) | |
| 77-204, gnl|Mm7|chr10 (80844240-80844113) | |
| 77-204, gnl|oryCun1|scaffold_130578 (3758-3863) | |
| 77-204, gnl|panTro1|chr20 (2846181-2846286) | |
| 77-204, gnl|rheMac2|chr19 (2601604-2601709) | |
| 77-204, gnl|rn3|chr7 (10145927-10145822) | |
| 77-204, gnl|tetNig1|chrUn_random (1987158-1987069) | |
| 395-507, gnl|bosTau2|chr7 (18348776-18348666) | |
| 395-507, gnl|canFam2|chr20 (59584061-59583922) | |
| 395-507, gnl|danRer3|chr10 (1145009-1144883) | |
| 395-507, gnl|dasNov1|scaffold_91823 (2509-2428) | |
| 395-507, gnl|echTel1|scaffold_207961 (3635-3533) | |
| 395-507, gnl|fr1|chrUn (58422877-58422996) | |
| 395-507, gnl|galGal2|chrUn (147735280-147735406) | |
| 395-507, gnl|hg17|chr19 (2716176-2716318) | |
| 395-507, gnl|Hg17|chr19 (2716285-2716175) | |
| 395-507, gnl|loxAfr1|scaffold_25742 (22190-22063) | |
| 395-507, gnl|mm7|chr10 (80841778-80841898) | |
| 395-507, gnl|Mm7|chr10 (80841880-80841771) | |
| 395-507, gnl|monDom2|scaffold_0 (188571792-188571895) | |
| 395-507, gnl|panTro1|chr20 (2842358-2842500) | |
| 395-507, gnl|rheMac2|chr19 (2597858-2598001) | |
| 395-507, gnl|rn3|chr7 (10149007-10148875) | |
| 395-507, gnl|tetNig1|chrUn_random (1987790-1987686) | |
| 601-739, gnl|bosTau2|chr7 (18347486-18347348) | |
| 601-739, gnl|canFam2|chr20 (59586474-59586312) | |
| 601-739, gnl|danRer3|chr10 (1146839-1146694) | |
| 601-739, gnl|echTel1|scaffold_207961 (3881-3741) | |
| 601-739, gnl|fr1|chrUn (58422458-58422603) | |
| 601-739, gnl|galGal2|chrUn (147734109-147734254) | |
| 601-739, gnl|hg17|chr19 (2713500-2713668) | |
| 601-739, gnl|Hg17|chr19 (2713643-2713505) | |
| 601-739, gnl|loxAfr1|scaffold_25742 (24670-24508) | |
| 601-739, gnl|mm7|chr10 (80840831-80840997) | |
| 601-739, gnl|Mm7|chr10 (80840974-80840836) | |
| 601-739, gnl|monDom2|scaffold_75 (5399259-5399422) | |
| 601-739, gnl|oryCun1|scaffold_89288 (1951-1850) | |
| 601-739, gnl|panTro1|chr20 (2839666-2839834) | |
| 601-739, gnl|rheMac2|chr19 (2595345-2595513) | |
| 601-739, gnl|rn3|chr7 (10149882-10149729) | |
| 601-739, gnl|tetNig1|chrUn_random (1988226-1988077) | |
| 932-1044, gnl|bosTau2|chr7 (18344410-18344298) | |
| 932-1044, gnl|Hg17|chr19 (2708455-2708343) | |
| 932-1044, gnl|Mm7|chr10 (80838309-80838194) | |
| 1057-1880, gnl|bosTau2|chr7 (18344204-18343324) | |
| 1057-1880, gnl|Hg17|chr19 (2706926-2705970) | |
| 1952-2195, gnl|bosTau2|chr7 (18343303-18343067) | |
| 1952-2195, gnl|Hg17|chr19 (2705951-2705712) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-204, gnl|bosTau2|chr7 (18350735-18350609) | |
| 77-204, gnl|canFam2|chr20 (59582103-59581998) | |
| 77-204, gnl|danRer3|chr10 (1142425-1142308) | |
| 77-204, gnl|dasNov1|scaffold_275806 (246-350) | |
| 77-204, gnl|echTel1|scaffold_207961 (3328-3223) | |
| 77-204, gnl|fr1|chrUn (58423583-58423685) | |
| 77-204, gnl|galGal2|chrUn (147737551-147737656) | |
| 77-204, gnl|hg17|chr19 (2719968-2720077) | |
| 77-204, gnl|Hg17|chr19 (2720094-2719967) | |
| 77-204, gnl|loxAfr1|scaffold_25742 (18021-17917) | |
| 77-204, gnl|mm7|chr10 (80844114-80844219) | |
| 77-204, gnl|Mm7|chr10 (80844240-80844113) | |
| 77-204, gnl|oryCun1|scaffold_130578 (3758-3863) | |
| 77-204, gnl|panTro1|chr20 (2846181-2846286) | |
| 77-204, gnl|rheMac2|chr19 (2601604-2601709) | |
| 77-204, gnl|rn3|chr7 (10145927-10145822) | |
| 77-204, gnl|tetNig1|chrUn_random (1987158-1987069) | |
| 395-507, gnl|bosTau2|chr7 (18348776-18348666) | |
| 395-507, gnl|canFam2|chr20 (59584061-59583922) | |
| 395-507, gnl|danRer3|chr10 (1145009-1144883) | |
| 395-507, gnl|dasNov1|scaffold_91823 (2509-2428) | |
| 395-507, gnl|echTel1|scaffold_207961 (3635-3533) | |
| 395-507, gnl|fr1|chrUn (58422877-58422996) | |
| 395-507, gnl|galGal2|chrUn (147735280-147735406) | |
| 395-507, gnl|hg17|chr19 (2716176-2716318) | |
| 395-507, gnl|Hg17|chr19 (2716285-2716175) | |
| 395-507, gnl|loxAfr1|scaffold_25742 (22190-22063) | |
| 395-507, gnl|mm7|chr10 (80841778-80841898) | |
| 395-507, gnl|Mm7|chr10 (80841880-80841771) | |
| 395-507, gnl|monDom2|scaffold_0 (188571792-188571895) | |
| 395-507, gnl|panTro1|chr20 (2842358-2842500) | |
| 395-507, gnl|rheMac2|chr19 (2597858-2598001) | |
| 395-507, gnl|rn3|chr7 (10149007-10148875) | |
| 395-507, gnl|tetNig1|chrUn_random (1987790-1987686) | |
| 601-739, gnl|bosTau2|chr7 (18347486-18347348) | |
| 601-739, gnl|canFam2|chr20 (59586474-59586312) | |
| 601-739, gnl|danRer3|chr10 (1146839-1146694) | |
| 601-739, gnl|echTel1|scaffold_207961 (3881-3741) | |
| 601-739, gnl|fr1|chrUn (58422458-58422603) | |
| 601-739, gnl|galGal2|chrUn (147734109-147734254) | |
| 601-739, gnl|hg17|chr19 (2713500-2713668) | |
| 601-739, gnl|Hg17|chr19 (2713643-2713505) | |
| 601-739, gnl|loxAfr1|scaffold_25742 (24670-24508) | |
| 601-739, gnl|mm7|chr10 (80840831-80840997) | |
| 601-739, gnl|Mm7|chr10 (80840974-80840836) | |
| 601-739, gnl|monDom2|scaffold_75 (5399259-5399422) | |
| 601-739, gnl|oryCun1|scaffold_89288 (1951-1850) | |
| 601-739, gnl|panTro1|chr20 (2839666-2839834) | |
| 601-739, gnl|rheMac2|chr19 (2595345-2595513) | |
| 601-739, gnl|rn3|chr7 (10149882-10149729) | |
| 601-739, gnl|tetNig1|chrUn_random (1988226-1988077) | |
| 932-1044, gnl|bosTau2|chr7 (18344410-18344298) | |
| 932-1044, gnl|Hg17|chr19 (2708455-2708343) | |
| 932-1044, gnl|Mm7|chr10 (80838309-80838194) | |
| 1057-1880, gnl|bosTau2|chr7 (18344204-18343324) | |
| 1057-1880, gnl|Hg17|chr19 (2706926-2705970) | |
| 1952-2195, gnl|bosTau2|chr7 (18343303-18343067) | |
| 1952-2195, gnl|Hg17|chr19 (2705951-2705712) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| fcc (0.39557) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| fcc (0.39557) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |