Non-Coding RNA Search

Ss1.1-mCP1-MI-P-CP1-nzd-o-16-0-UI.s1.3

Sequence:


               
               AGCCAGCCCACCGGTCTCCATGAACAAGCTGCCAGCCCCCCGGGTGTCCGCCTCCTGTCA
CGCGGAGCACTGAGAATCCCACGCATTCGCCACATCATGCGTCTGCCCCTCAAAGTGTGT
CGTGGCATCACATTGACTTGTCCTCCTGCCATGGTCCAAGCCACCACTCATGCCACCACC
ACGCATCCCAGCCATCCTGCCAATCCCCAGGAGTGTCCCACCCACCTCCAAAGGGTTAAC
GGCCAACCCTTCCGGGTGCGAGGGGTAGATCGATCCCGCGGCCGCTCCCTCCGGGGCTCC
CCGCATGTGGCCCAGTGGCTCCACAGCTTCTTTGCCCTTCCTCTATCCTCTGTGCCTCCC
CAGCTTGATGCCTCTGCCAGGGGGCACCTGGGGGGAGGCAGAGGAGCACCCCTGACTCTT
GGGGCAAGAATCTCCCCTGGGGATTCTGGCAGGGCCCCCATGGAGAATCTCCAAGTCCAG
GTCCCACTGGAAGGCCCTCCAGATGCATTTCCACCACCCCATCCTCCAGAGAGACCTCCC
ACCAGCATGAGCACCCCGCAGACAAGCCTCTAAGAGCCCCACGTGCCCTCCTACTCCACA
GCCCTAACCCTGAGCACCTTCCTCTTGTAACCTTGTGGCCAGCACCCACCCCGCCGCCCG
GCCCTGCACACAGTAGGCGCGCACTGCATCTTGTCAGGGAATGAAGAGCTACGTGGACCT
CAGGGCAAAGAGACCAAGTCCTTCCCAGCCAGGGGGCCATGACTGATGGGGCCATTGCTC
TCTACATCCTCCAGCCTCTTTTCCCCAAACAAGAAAGCTTCTCTCCCCCTTTGCACCTCC
CACTGCCCCATTCCCCCACCCCAAGCCTTCCCTCTGGGCCTCTGCCGGGATGTGAGCCCA
CAAGTGCAAGGACTCTGCTGCTCCCAGGCCCTGGCAGGTGTGGCTACTCAATAAATACCT
ATTGAACCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCAGCCCACCGGTCTCCATGAACAAGCTGCCAGCCCCCCGGGTGTCCGCCTCCTGTCA
CGCGGAGCACTGAGAATCCCACGCATTCGCCACATCATGCGTCTGCCCCTCAAAGTGTGT
CGTGGCATCACATTGACTTGTCCTCCTGCCATGGTCCAAGCCACCACTCATGCCACCACC
ACGCATCCCAGCCATCCTGCCAATCCCCAGGAGTGTCCCACCCACCTCCAAAGGGTTAAC
GGCCAACCCTTCCGGGTGCGAGGGGTAGATCGATCCCGCGGCCGCTCCCTCCGGGGCTCC
CCGCATGTGGCCCAGTGGCTCCACAGCTTCTTTGCCCTTCCTCTATCCTCTGTGCCTCCC
CAGCTTGATGCCTCTGCCAGGGGGCACCTGGGGGGAGGCAGAGGAGCACCCCTGACTCTT
GGGGCAAGAATCTCCCCTGGGGATTCTGGCAGGGCCCCCATGGAGAATCTCCAAGTCCAG
GTCCCACTGGAAGGCCCTCCAGATGCATTTCCACCACCCCATCCTCCAGAGAGACCTCCC
ACCAGCATGAGCACCCCGCAGACAAGCCTCTAAGAGCCCCACGTGCCCTCCTACTCCACA
GCCCTAACCCTGAGCACCTTCCTCTTGTAACCTTGTGGCCAGCACCCACCCCGCCGCCCG
GCCCTGCACACAGTAGGCGCGCACTGCATCTTGTCAGGGAATGAAGAGCTACGTGGACCT
CAGGGCAAAGAGACCAAGTCCTTCCCAGCCAGGGGGCCATGACTGATGGGGCCATTGCTC
TCTACATCCTCCAGCCTCTTTTCCCCAAACAAGAAAGCTTCTCTCCCCCTTTGCACCTCC
CACTGCCCCATTCCCCCACCCCAAGCCTTCCCTCTGGGCCTCTGCCGGGATGTGAGCCCA
CAAGTGCAAGGACTCTGCTGCTCCCAGGCCCTGGCAGGTGTGGCTACTCAATAAATACCT
ATTGAACCATCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-439, + strand, RNAz p=0.999725
               

               
               856-970, - strand, RNAz p=0.917658

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-439, + strand, RNAz p=0.999725
               

               
               856-970, - strand, RNAz p=0.917658

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               356-531, - strand, RNAmicro p=0.995462

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               356-531, - strand, RNAmicro p=0.995462

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of M80185, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of M80185, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-605, gnl|bosTau2|chr21 (24011052-24011638)
               

               
               1-605, gnl|Hg17|chr15 (72114773-72115371)
               

               
               1-605, gnl|Mm7|chr9 (58256307-58255778)
               


               
               695-970, gnl|bosTau2|chr21 (24011685-24011941)
               

               
               695-970, gnl|Hg17|chr15 (72115475-72115786)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-605, gnl|bosTau2|chr21 (24011052-24011638)
               

               
               1-605, gnl|Hg17|chr15 (72114773-72115371)
               

               
               1-605, gnl|Mm7|chr9 (58256307-58255778)
               


               
               695-970, gnl|bosTau2|chr21 (24011685-24011941)
               

               
               695-970, gnl|Hg17|chr15 (72115475-72115786)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cga (0.279096)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               lnt (0.142308)

	280-439, + strand, RNAz p=0.999725
	856-970, - strand, RNAz p=0.917658

	1-605, gnl\|bosTau2\|chr21 (24011052-24011638)
	1-605, gnl\|Hg17\|chr15 (72114773-72115371)
	1-605, gnl\|Mm7\|chr9 (58256307-58255778)

	695-970, gnl\|bosTau2\|chr21 (24011685-24011941)
	695-970, gnl\|Hg17\|chr15 (72115475-72115786)