Ss1.1-mCP1-MI-P-CP1-nzd-p-01-0-UI.s1.3
|
CTCAGGTGCGAGGAGGCTATGTGCTGCACATAGGAACCATCTATGGCAGCCTGAAAGTGG
GGGATCAGGTTCGGCTGTTTATTGATGAGCCCCGACGGAGGCCTGTCATGAGCAACCACA
CAGCCACCCATATCCTGAACTTTGCCCTGCGCTCTGTGCTTGGAGAGGCTGACCAGAGAG
GCTCCCTGGTTGCTCCTGACCGCCTTCGGTTTGACTTCACTGCCAAGGGAGCCATGTCTA
CCCAGCAGATTAAGAAGGCCGAGGAGCTGGCTAATGAGATGATAGAGGCAGCCAAGCCCG
TCTATGCCCAGAATTGTCCTCTGGCGGCAGCCAAAGCCATCCAGGGCCTGCGGGCTGTGT
TTGACGAGACCTACCCCGACCCTGTGCGAGTCGTCTCCATTGGGGTCCCGGTGTCCGAGC
TGCTGGATGACCCCTCCGGTCCCGCTGGCTCACTCACTTCTGTTGAGTTCTGTGGGGGAA
CGCATCTGCAGAATTCGAGTCATGCGGGAGCCTTTGTGATTGTGAGTGAAGAAGCTATTG
CCAAGGGCATCCGGCGGATTGTTGCTGTCACTGGTGCTGAAGCCCAGAAGGCCCTCAGGA
AAGCGGACAGCCTGATGAAATCTCTGTGTGCCATGGAGGCCAAAGTGAAGGCCCAGACTG
CGCCCAATAAGGACGTGCAGAGGGAGATTGCTGACCTTGGCGAGGCCCTAGCCACCGCAG
TCATCCCCCAGTGGCAGAAGGACGAATTCCGGGAGAATCTCAAATCCCTGAAGAAGGTCA
TGGATGACCTAGACCGGGCTAGTAAAGCCGATGTCCAGAAGCGGGTGTTGGAGAGGACAA
AACAGCTCATTGACAGCAACCCCAACCAGCCCCTTGTCATCCTGGAGATGGAGAGCGGCG
CCTCAGCCAAGGCCCTGAACGAAGCCTTGAAACTCTTCAAGACACATTCTCCTCAGACGT
CTGCCATGCTCTTCACAGTGGATAATGAAGCTGGCAAGATCATCTGCTTGTGTCAAGTCC
CCCAGAATATAGCCAACCGGGGCCTGAAAGCCAGCGAGTGGGTGCAACAGGTGTCAGGCC
TGATGGATGGCAAAGGTGGTGGCAAAGATGTGTCCGCTCAGGCCACAGGCAAGAACGTGG
GCTGCCTGCAGGAGGCGCTGCAGCTGGCCACTTCCTTTGCCCAGCTCCGCCTGGAAGATG
TGAAGAACTGAGGGGGAAGGGTGGCTTCCACAGGGAGGTGTCTCCTCACTCAGATGCATC
CGTCCAACCAGGAGCTCTCCGTCTGCCACAAGGGACATTTTAATCTTGGGACCTTTAAGC
AGCCCCATCTGTCCTCCTAACCCAGCAGTAACTGTAACTTAACCTGGGAGCCAGCCTGTG
ACTCAATGCCCTTGTTACATTTCTGCCCTGAACACGTCAGCACCATCTGTTAGAACCACT
ACCCTAGGATTGCTGTTTATCGTTGTCAAGCTTGTGTCTATAGAAAGAGTTCTCTGTAGA
CCCAAGGTTCTGGGCCTGCAGGAAGGAATCATTTTTTGCTGCAGAGAATAAAAGGACCAT
GTGCAATACTTGAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCAGGTGCGAGGAGGCTATGTGCTGCACATAGGAACCATCTATGGCAGCCTGAAAGTGG
GGGATCAGGTTCGGCTGTTTATTGATGAGCCCCGACGGAGGCCTGTCATGAGCAACCACA
CAGCCACCCATATCCTGAACTTTGCCCTGCGCTCTGTGCTTGGAGAGGCTGACCAGAGAG
GCTCCCTGGTTGCTCCTGACCGCCTTCGGTTTGACTTCACTGCCAAGGGAGCCATGTCTA
CCCAGCAGATTAAGAAGGCCGAGGAGCTGGCTAATGAGATGATAGAGGCAGCCAAGCCCG
TCTATGCCCAGAATTGTCCTCTGGCGGCAGCCAAAGCCATCCAGGGCCTGCGGGCTGTGT
TTGACGAGACCTACCCCGACCCTGTGCGAGTCGTCTCCATTGGGGTCCCGGTGTCCGAGC
TGCTGGATGACCCCTCCGGTCCCGCTGGCTCACTCACTTCTGTTGAGTTCTGTGGGGGAA
CGCATCTGCAGAATTCGAGTCATGCGGGAGCCTTTGTGATTGTGAGTGAAGAAGCTATTG
CCAAGGGCATCCGGCGGATTGTTGCTGTCACTGGTGCTGAAGCCCAGAAGGCCCTCAGGA
AAGCGGACAGCCTGATGAAATCTCTGTGTGCCATGGAGGCCAAAGTGAAGGCCCAGACTG
CGCCCAATAAGGACGTGCAGAGGGAGATTGCTGACCTTGGCGAGGCCCTAGCCACCGCAG
TCATCCCCCAGTGGCAGAAGGACGAATTCCGGGAGAATCTCAAATCCCTGAAGAAGGTCA
TGGATGACCTAGACCGGGCTAGTAAAGCCGATGTCCAGAAGCGGGTGTTGGAGAGGACAA
AACAGCTCATTGACAGCAACCCCAACCAGCCCCTTGTCATCCTGGAGATGGAGAGCGGCG
CCTCAGCCAAGGCCCTGAACGAAGCCTTGAAACTCTTCAAGACACATTCTCCTCAGACGT
CTGCCATGCTCTTCACAGTGGATAATGAAGCTGGCAAGATCATCTGCTTGTGTCAAGTCC
CCCAGAATATAGCCAACCGGGGCCTGAAAGCCAGCGAGTGGGTGCAACAGGTGTCAGGCC
TGATGGATGGCAAAGGTGGTGGCAAAGATGTGTCCGCTCAGGCCACAGGCAAGAACGTGG
GCTGCCTGCAGGAGGCGCTGCAGCTGGCCACTTCCTTTGCCCAGCTCCGCCTGGAAGATG
TGAAGAACTGAGGGGGAAGGGTGGCTTCCACAGGGAGGTGTCTCCTCACTCAGATGCATC
CGTCCAACCAGGAGCTCTCCGTCTGCCACAAGGGACATTTTAATCTTGGGACCTTTAAGC
AGCCCCATCTGTCCTCCTAACCCAGCAGTAACTGTAACTTAACCTGGGAGCCAGCCTGTG
ACTCAATGCCCTTGTTACATTTCTGCCCTGAACACGTCAGCACCATCTGTTAGAACCACT
ACCCTAGGATTGCTGTTTATCGTTGTCAAGCTTGTGTCTATAGAAAGAGTTCTCTGTAGA
CCCAAGGTTCTGGGCCTGCAGGAAGGAATCATTTTTTGCTGCAGAGAATAAAAGGACCAT
GTGCAATACTTGAAAAAAAAAAAA
|
|
gi|20072365|gb|AAH26611.1| |
Protein identifier
|
gi|20072365|gb|AAH26611.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
88-296, gnl|bosTau2|chr18 (654179-654387) |
|
88-296, gnl|Hg17|chr16 (68850592-68850384) |
|
88-296, gnl|Mm7|chr8 (109649873-109650081) |
| |
|
483-591, gnl|bosTau2|chr18 (656119-656227) |
|
483-591, gnl|Hg17|chr16 (68847239-68847131) |
|
483-591, gnl|Mm7|chr8 (109652590-109652698) |
| |
|
687-827, gnl|bosTau2|chr18 (657506-657647) |
|
687-827, gnl|Hg17|chr16 (68845458-68845320) |
|
687-827, gnl|Mm7|chr8 (109654046-109654187) |
| |
|
1017-1573, gnl|bosTau2|chr18 (658771-659328) |
|
1017-1573, gnl|Hg17|chr16 (68844319-68843789) |
|
1017-1573, gnl|Mm7|chr8 (109655186-109655748) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
88-296, gnl|bosTau2|chr18 (654179-654387) |
|
88-296, gnl|Hg17|chr16 (68850592-68850384) |
|
88-296, gnl|Mm7|chr8 (109649873-109650081) |
| |
|
483-591, gnl|bosTau2|chr18 (656119-656227) |
|
483-591, gnl|Hg17|chr16 (68847239-68847131) |
|
483-591, gnl|Mm7|chr8 (109652590-109652698) |
| |
|
687-827, gnl|bosTau2|chr18 (657506-657647) |
|
687-827, gnl|Hg17|chr16 (68845458-68845320) |
|
687-827, gnl|Mm7|chr8 (109654046-109654187) |
| |
|
1017-1573, gnl|bosTau2|chr18 (658771-659328) |
|
1017-1573, gnl|Hg17|chr16 (68844319-68843789) |
|
1017-1573, gnl|Mm7|chr8 (109655186-109655748) |
|
col (0.390016) |
|
fbs (0.350693) |
|
fhi (0.339155) |
|
csp (0.322373) |
|
cte (0.29274) |
|
spl (0.286369) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
lun (0.150489) |
|
lin (0.145603) |
|
pty (0.142714) |
|
cly (0.120642) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
col (0.390016) |
|
fbs (0.350693) |
|
fhi (0.339155) |
|
csp (0.322373) |
|
cte (0.29274) |
|
spl (0.286369) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
lun (0.150489) |
|
lin (0.145603) |
|
pty (0.142714) |
|
cly (0.120642) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
