Ss1.1-mE3-MI-P-E3-aak-h-05-1-UM.s1.3
|
ATTTTAACTATCATGAAAATTCTCCTCAGCCGAATATCGGTTTTTTCCCTATAAGGTATA
CAAGCACCATTTCTTCTCAATTTCTTAAAAAGAGAAATGAGTTCATTACTACATGGTTTC
TTATTTATAACTAATTACATGACAAATTTTTCCCATCAAAAAGACATCCCACCCAGCCTT
CATTTTCAAAGCAGAGAGCATTTATGTGGCCAAATATCCTTTGGGTTGGTTTTGAAGATG
CTGGTTTTGGGCTGATGACTAGGATGGCCACATGGATCCACTGGGCTCTGTCTGCTGAAT
AGCTGCATTCAAATACCTTGGAAGCAAATCAGATCAGCTGATTTATAAAACTGTATTTAT
CTGTACATGTATGGGCTTTTAATTTCCACCAAGAGAGAAAGTATCTCTTTAGTGAAAACC
AAATTTCACTTTTCAAATACCTTCCAACTTATTTATTGGTTGCTACTCAATTTCCTGTGT
GTGTGTATGCATGTGTGTGTGTGTGTGTAAGTCCAAGTGCACATTTGTGCATGTGTGTAT
TATCAGGCATATGCTTCTAACTTTTAGATAGGAAAGGAGCAAAATCTATGCCAGATACTG
TGTATTCTACAATGGTGCTAATCTCAGAGCTAAATGAATTACTCCATTTAATTTAAAAAA
AGAGTTTTAAATAATTGTCTATGTATCTATGTTTCCCTTTTGAGTGCTGCACATCATGTT
GACACATTTAGTATAAAAGCATATGAAACAACCACATGTTCTAAAGTCTAGGGATAGTGT
TACAATCCCTATTTAATTCAAAATTAACTAGAACTTTTCCATGTGAAATGAACCAAATTG
ATAATATTGTTATTTAAATACAGAGTTTTAATGCAGTATGACATCCCACAGGGGAAAAGA
ATGTCTATAGTGGGTGACTGTTCTCAAGTATTTTACAGGATACCATGAATGGTGAACAGA
CTGGTAACTTTTTTTGAGTTTCCATGATAGATTTGAGACTTGTCAATAGCAAATCATTTT
TGTATTTAAATTTTTGTACTGATTTGAAAAAAAACGTCTTATTAAATACCTTTAAAAGTA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTTTAACTATCATGAAAATTCTCCTCAGCCGAATATCGGTTTTTTCCCTATAAGGTATA
CAAGCACCATTTCTTCTCAATTTCTTAAAAAGAGAAATGAGTTCATTACTACATGGTTTC
TTATTTATAACTAATTACATGACAAATTTTTCCCATCAAAAAGACATCCCACCCAGCCTT
CATTTTCAAAGCAGAGAGCATTTATGTGGCCAAATATCCTTTGGGTTGGTTTTGAAGATG
CTGGTTTTGGGCTGATGACTAGGATGGCCACATGGATCCACTGGGCTCTGTCTGCTGAAT
AGCTGCATTCAAATACCTTGGAAGCAAATCAGATCAGCTGATTTATAAAACTGTATTTAT
CTGTACATGTATGGGCTTTTAATTTCCACCAAGAGAGAAAGTATCTCTTTAGTGAAAACC
AAATTTCACTTTTCAAATACCTTCCAACTTATTTATTGGTTGCTACTCAATTTCCTGTGT
GTGTGTATGCATGTGTGTGTGTGTGTGTAAGTCCAAGTGCACATTTGTGCATGTGTGTAT
TATCAGGCATATGCTTCTAACTTTTAGATAGGAAAGGAGCAAAATCTATGCCAGATACTG
TGTATTCTACAATGGTGCTAATCTCAGAGCTAAATGAATTACTCCATTTAATTTAAAAAA
AGAGTTTTAAATAATTGTCTATGTATCTATGTTTCCCTTTTGAGTGCTGCACATCATGTT
GACACATTTAGTATAAAAGCATATGAAACAACCACATGTTCTAAAGTCTAGGGATAGTGT
TACAATCCCTATTTAATTCAAAATTAACTAGAACTTTTCCATGTGAAATGAACCAAATTG
ATAATATTGTTATTTAAATACAGAGTTTTAATGCAGTATGACATCCCACAGGGGAAAAGA
ATGTCTATAGTGGGTGACTGTTCTCAAGTATTTTACAGGATACCATGAATGGTGAACAGA
CTGGTAACTTTTTTTGAGTTTCCATGATAGATTTGAGACTTGTCAATAGCAAATCATTTT
TGTATTTAAATTTTTGTACTGATTTGAAAAAAAACGTCTTATTAAATACCTTTAAAAGTA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
532-594, UMC-bcl_0B02-014-c05 Day 14 CL +8h prostaglandin F2-alpha bcl Bos
(gb|CV976835.1|), blast E-value=1e-23, identity=98.41% |
|
532-594, 797094 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX737746.1|),
blast E-value=1e-23, identity=98.41% |
|
532-594, 797862 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CX737747.1|),
blast E-value=1e-23, identity=98.41% |
|
532-594, LB00555.CR_L19 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT862255.1|),
blast E-value=1e-23, identity=98.41% |
|
532-594, 000410BTYA005099HT BTYA Bos taurus cDNA, mRNA sequence
(gb|DY136004.1|), blast E-value=1e-23, identity=98.41% |
|
536-594, LB0216.CR_C04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE236992.1|),
blast E-value=3e-21, identity=98.31% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
532-594, UMC-bcl_0B02-014-c05 Day 14 CL +8h prostaglandin F2-alpha bcl Bos
(gb|CV976835.1|), blast E-value=1e-23, identity=98.41% |
|
532-594, 797094 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX737746.1|),
blast E-value=1e-23, identity=98.41% |
|
532-594, 797862 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CX737747.1|),
blast E-value=1e-23, identity=98.41% |
|
532-594, LB00555.CR_L19 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT862255.1|),
blast E-value=1e-23, identity=98.41% |
|
532-594, 000410BTYA005099HT BTYA Bos taurus cDNA, mRNA sequence
(gb|DY136004.1|), blast E-value=1e-23, identity=98.41% |
|
536-594, LB0216.CR_C04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE236992.1|),
blast E-value=3e-21, identity=98.31% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
vin (0.332557) |
|
jca (0.22792) |
|
fli (0.202881) |
|
aor (0.195274) |
|
fbs (0.175346) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
vin (0.332557) |
|
jca (0.22792) |
|
fli (0.202881) |
|
aor (0.195274) |
|
fbs (0.175346) |
|
bfe (0.149858) |
|
nca (0.136874) |