Non-Coding RNA Search

Ss1.1-mE3-MI-P-E3-aak-h-05-1-UM.s1.3

Sequence:


               
               ATTTTAACTATCATGAAAATTCTCCTCAGCCGAATATCGGTTTTTTCCCTATAAGGTATA
CAAGCACCATTTCTTCTCAATTTCTTAAAAAGAGAAATGAGTTCATTACTACATGGTTTC
TTATTTATAACTAATTACATGACAAATTTTTCCCATCAAAAAGACATCCCACCCAGCCTT
CATTTTCAAAGCAGAGAGCATTTATGTGGCCAAATATCCTTTGGGTTGGTTTTGAAGATG
CTGGTTTTGGGCTGATGACTAGGATGGCCACATGGATCCACTGGGCTCTGTCTGCTGAAT
AGCTGCATTCAAATACCTTGGAAGCAAATCAGATCAGCTGATTTATAAAACTGTATTTAT
CTGTACATGTATGGGCTTTTAATTTCCACCAAGAGAGAAAGTATCTCTTTAGTGAAAACC
AAATTTCACTTTTCAAATACCTTCCAACTTATTTATTGGTTGCTACTCAATTTCCTGTGT
GTGTGTATGCATGTGTGTGTGTGTGTGTAAGTCCAAGTGCACATTTGTGCATGTGTGTAT
TATCAGGCATATGCTTCTAACTTTTAGATAGGAAAGGAGCAAAATCTATGCCAGATACTG
TGTATTCTACAATGGTGCTAATCTCAGAGCTAAATGAATTACTCCATTTAATTTAAAAAA
AGAGTTTTAAATAATTGTCTATGTATCTATGTTTCCCTTTTGAGTGCTGCACATCATGTT
GACACATTTAGTATAAAAGCATATGAAACAACCACATGTTCTAAAGTCTAGGGATAGTGT
TACAATCCCTATTTAATTCAAAATTAACTAGAACTTTTCCATGTGAAATGAACCAAATTG
ATAATATTGTTATTTAAATACAGAGTTTTAATGCAGTATGACATCCCACAGGGGAAAAGA
ATGTCTATAGTGGGTGACTGTTCTCAAGTATTTTACAGGATACCATGAATGGTGAACAGA
CTGGTAACTTTTTTTGAGTTTCCATGATAGATTTGAGACTTGTCAATAGCAAATCATTTT
TGTATTTAAATTTTTGTACTGATTTGAAAAAAAACGTCTTATTAAATACCTTTAAAAGTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAACTATCATGAAAATTCTCCTCAGCCGAATATCGGTTTTTTCCCTATAAGGTATA
CAAGCACCATTTCTTCTCAATTTCTTAAAAAGAGAAATGAGTTCATTACTACATGGTTTC
TTATTTATAACTAATTACATGACAAATTTTTCCCATCAAAAAGACATCCCACCCAGCCTT
CATTTTCAAAGCAGAGAGCATTTATGTGGCCAAATATCCTTTGGGTTGGTTTTGAAGATG
CTGGTTTTGGGCTGATGACTAGGATGGCCACATGGATCCACTGGGCTCTGTCTGCTGAAT
AGCTGCATTCAAATACCTTGGAAGCAAATCAGATCAGCTGATTTATAAAACTGTATTTAT
CTGTACATGTATGGGCTTTTAATTTCCACCAAGAGAGAAAGTATCTCTTTAGTGAAAACC
AAATTTCACTTTTCAAATACCTTCCAACTTATTTATTGGTTGCTACTCAATTTCCTGTGT
GTGTGTATGCATGTGTGTGTGTGTGTGTAAGTCCAAGTGCACATTTGTGCATGTGTGTAT
TATCAGGCATATGCTTCTAACTTTTAGATAGGAAAGGAGCAAAATCTATGCCAGATACTG
TGTATTCTACAATGGTGCTAATCTCAGAGCTAAATGAATTACTCCATTTAATTTAAAAAA
AGAGTTTTAAATAATTGTCTATGTATCTATGTTTCCCTTTTGAGTGCTGCACATCATGTT
GACACATTTAGTATAAAAGCATATGAAACAACCACATGTTCTAAAGTCTAGGGATAGTGT
TACAATCCCTATTTAATTCAAAATTAACTAGAACTTTTCCATGTGAAATGAACCAAATTG
ATAATATTGTTATTTAAATACAGAGTTTTAATGCAGTATGACATCCCACAGGGGAAAAGA
ATGTCTATAGTGGGTGACTGTTCTCAAGTATTTTACAGGATACCATGAATGGTGAACAGA
CTGGTAACTTTTTTTGAGTTTCCATGATAGATTTGAGACTTGTCAATAGCAAATCATTTT
TGTATTTAAATTTTTGTACTGATTTGAAAAAAAACGTCTTATTAAATACCTTTAAAAGTA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               457-594, + strand, RNAz p=0.999784

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-594, + strand, RNAz p=0.999784

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               532-594, UMC-bcl_0B02-014-c05 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|CV976835.1|), blast E-value=1e-23, identity=98.41% 
               

               
               532-594, 797094 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX737746.1|), 
blast E-value=1e-23, identity=98.41% 
               

               
               532-594, 797862 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CX737747.1|), 
blast E-value=1e-23, identity=98.41% 
               

               
               532-594, LB00555.CR_L19 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT862255.1|), 
blast E-value=1e-23, identity=98.41% 
               

               
               532-594, 000410BTYA005099HT BTYA Bos taurus cDNA, mRNA sequence 
(gb|DY136004.1|), blast E-value=1e-23, identity=98.41% 
               

               
               536-594, LB0216.CR_C04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE236992.1|), 
blast E-value=3e-21, identity=98.31%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               532-594, UMC-bcl_0B02-014-c05 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|CV976835.1|), blast E-value=1e-23, identity=98.41% 
               

               
               532-594, 797094 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX737746.1|), 
blast E-value=1e-23, identity=98.41% 
               

               
               532-594, 797862 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CX737747.1|), 
blast E-value=1e-23, identity=98.41% 
               

               
               532-594, LB00555.CR_L19 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT862255.1|), 
blast E-value=1e-23, identity=98.41% 
               

               
               532-594, 000410BTYA005099HT BTYA Bos taurus cDNA, mRNA sequence 
(gb|DY136004.1|), blast E-value=1e-23, identity=98.41% 
               

               
               536-594, LB0216.CR_C04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE236992.1|), 
blast E-value=3e-21, identity=98.31%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1080, gnl|bosTau2|chr1 (23528149-23529215)
               

               
               1-1080, gnl|Hg17|chr3 (100999659-101000751)
               

               
               1-1080, gnl|Mm7|chr16 (57486754-57485709)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1080, gnl|bosTau2|chr1 (23528149-23529215)
               

               
               1-1080, gnl|Hg17|chr3 (100999659-101000751)
               

               
               1-1080, gnl|Mm7|chr16 (57486754-57485709)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)

	532-594, UMC-bcl_0B02-014-c05 Day 14 CL +8h prostaglandin F2-alpha bcl Bos (gb\|CV976835.1\|), blast E-value=1e-23, identity=98.41%
	532-594, 797094 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CX737746.1\|), blast E-value=1e-23, identity=98.41%
	532-594, 797862 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CX737747.1\|), blast E-value=1e-23, identity=98.41%
	532-594, LB00555.CR_L19 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb\|DT862255.1\|), blast E-value=1e-23, identity=98.41%
	532-594, 000410BTYA005099HT BTYA Bos taurus cDNA, mRNA sequence (gb\|DY136004.1\|), blast E-value=1e-23, identity=98.41%
	536-594, LB0216.CR_C04 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb\|EE236992.1\|), blast E-value=3e-21, identity=98.31%

	1-1080, gnl\|bosTau2\|chr1 (23528149-23529215)
	1-1080, gnl\|Hg17\|chr3 (100999659-101000751)
	1-1080, gnl\|Mm7\|chr16 (57486754-57485709)

	vin (0.332557)
	jca (0.22792)
	fli (0.202881)
	aor (0.195274)
	fbs (0.175346)
	bfe (0.149858)
	nca (0.136874)