Non-Coding RNA Search

Ss1.1-mE3-MI-P-E3-agt-g-10-1-UM.s1.3

Sequence:


               
               TTTCATTCTCAAGACTTGCTGGTTCCCTGGCACCTTAAGGGAAATCCCGGTAAAGACAAA
GCTGTTGAGCCATTATGTGGTCCATTAGGATCCCATGACTCAGGTCCTGTGTTGCATCGT
TACTACCATGTGTTCTGTGAGGGAGAACTGGAAGCTGCCTGCCAGACTTTGAGCAATGTC
AGCATACTGCAAAGCTACTATGATCAGGGGAACTGGTGTGTGATTCTTCAAAAGGTCTGA
TTATCTCTATGAACATATCATATACGGGAAGAAATGCTCAGCTTTTTTAAAAAAGGAGAT
CAAACTACCTATATTTTTACTTAAAGAGAAAACTTGTGGAAGAGTTTCAAAGGAGAGTGT
CTGAGAGAAATTTGGAAGTAGAGATTAGTTAGGAAATATTCAGTCTACTGCTATTGTTCA
TTTAAAACATAAATGTAGGCTTATCCTACAGGGAGGAACATGGATGGTTTTTAGGATACT
TGGGATCCTAGGGTGAGAGTGCAGCATTTTGAAAATAAACTTTTTTTTTGGTCTCGCCTG
TGACATGTGGAAGTTCCCAGGCCAGGGATCAAGCCCAAGCCACAGCGATGACCCAAGCTG
CTGCAGTGACAACACCATATCCTTAACCTGCTGTGCCATAAGGGATCTCTGAGGATCAAC
TTTTGTTATAAAGTACTACTAAATGAGCTAAATCATGTGGAATCTTAGTAAAGTAATCAT
ATAACATTTTAATAAAAAATTCCTGTTCAATAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATTCTCAAGACTTGCTGGTTCCCTGGCACCTTAAGGGAAATCCCGGTAAAGACAAA
GCTGTTGAGCCATTATGTGGTCCATTAGGATCCCATGACTCAGGTCCTGTGTTGCATCGT
TACTACCATGTGTTCTGTGAGGGAGAACTGGAAGCTGCCTGCCAGACTTTGAGCAATGTC
AGCATACTGCAAAGCTACTATGATCAGGGGAACTGGTGTGTGATTCTTCAAAAGGTCTGA
TTATCTCTATGAACATATCATATACGGGAAGAAATGCTCAGCTTTTTTAAAAAAGGAGAT
CAAACTACCTATATTTTTACTTAAAGAGAAAACTTGTGGAAGAGTTTCAAAGGAGAGTGT
CTGAGAGAAATTTGGAAGTAGAGATTAGTTAGGAAATATTCAGTCTACTGCTATTGTTCA
TTTAAAACATAAATGTAGGCTTATCCTACAGGGAGGAACATGGATGGTTTTTAGGATACT
TGGGATCCTAGGGTGAGAGTGCAGCATTTTGAAAATAAACTTTTTTTTTGGTCTCGCCTG
TGACATGTGGAAGTTCCCAGGCCAGGGATCAAGCCCAAGCCACAGCGATGACCCAAGCTG
CTGCAGTGACAACACCATATCCTTAACCTGCTGTGCCATAAGGGATCTCTGAGGATCAAC
TTTTGTTATAAAGTACTACTAAATGAGCTAAATCATGTGGAATCTTAGTAAAGTAATCAT
ATAACATTTTAATAAAAAATTCCTGTTCAATAGAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               36-384, gnl|bosTau2|chr1 (5069519-5069169)
               

               
               36-384, gnl|Hg17|chr11 (106880795-106880453)
               

               
               36-384, gnl|Mm7|chr9 (3296539-3296837)
               


               
               650-757, gnl|bosTau2|chr1 (5068749-5068636)
               

               
               650-757, gnl|Hg17|chr11 (106880304-106880197)
               

               
               650-757, gnl|Mm7|chr9 (3296979-3297088)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-384, gnl|bosTau2|chr1 (5069519-5069169)
               

               
               36-384, gnl|Hg17|chr11 (106880795-106880453)
               

               
               36-384, gnl|Mm7|chr9 (3296539-3296837)
               


               
               650-757, gnl|bosTau2|chr1 (5068749-5068636)
               

               
               650-757, gnl|Hg17|chr11 (106880304-106880197)
               

               
               650-757, gnl|Mm7|chr9 (3296979-3297088)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

	36-384, gnl\|bosTau2\|chr1 (5069519-5069169)
	36-384, gnl\|Hg17\|chr11 (106880795-106880453)
	36-384, gnl\|Mm7\|chr9 (3296539-3296837)

	650-757, gnl\|bosTau2\|chr1 (5068749-5068636)
	650-757, gnl\|Hg17\|chr11 (106880304-106880197)
	650-757, gnl\|Mm7\|chr9 (3296979-3297088)

	sag (0.182715)
	sin (0.174948)
	mga (0.160205)
	ssp (0.13552)
	ova (0.129132)