Ss1.1-mE3-MI-P-E3-agv-f-07-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCTGTGCACGCAGATGGACAAGTAAAAGACCGTTACCAGGCTCACCGGGACACCATCG CGCTCCTGTGTAAGCCCGAGCCAGAGCTGAATGCTGCCATCCCTTCAGCAAATCCGGCAA AGACCATGCAGGGCAGTGAGGTTGTAAGTGTCTTAAAATCCTTATTGACAAATCTTGATG AAGTAAAGAAGGAAAGAGAAGGGCTGGAGAATGACCTGAAATCAGTGAATTTTGACATGA CGAGCAAATTTTTGACTGCTCTGGCTCAAGATGGTGTGATAAATGAAGAAGCTATTTCTG TTACTGAACTGGATCGAATCTATGGAGGTCTTACAACTAAAGTCCAAGAATCTCTAAAGA AACAGGAAGAACTTCTTAAAAATATTCAGGTCTCACACCAGGAATTTTCAAAAATGAAAC AATCTAACAGTGAAGCCAACTTAAGAGAAGAAGTTTTGAAGAACTTAGCTACTGCATATG ACAACTTTGTTGAACTTGTAGCTAATTTGAAGGAGGGCACAAAGTTTTACAATGAACTGA CTGAAATGCTCGTCAGGTTCCAGAACAAATGCAGTGATATAGTGTTTGCACGGAAGACAG AAAGAGATGAACTCTTAAAGGACTTGCAACAAAGCATTGCCAGAGAACCCAGTGCACCTT CAATTCCTACCCCGGCCTATCAGTCCTCTCCAGCAGGGGGACACACGCCAACTCCTCCGA CTCCAGCACCGAGAACCATGCCGCCTACTAAGCCCCAGCCCCCAGCCCGGCCTCCACCTC CTGTGCTTCCAGCAAATCGAGCTCCTCCTGCTACTGCTCCAGCCCCAGCCCAAGCTCCAG CTCCAGCTCCAGCCCCAGCAGGCACTGGGACCACTGCACCAGCTCCATCACAGACTCCTG GTTCAGCTCCCCCTCCACAGGCCCAGGGACCCCCGTACCCCACCTATCCAGGGTATCCTG GGTATTGCCAAATGCCCATGCCCATGGGCTATAATCCGTACGCATACGGCCAGTATAACA TGCCATATCCACCAGTGTATCACCAGAGCCCTGGACAGGCTCCTTACCCAGGACCCCAGC AGCCTTCATACCCTTTCCCTCAGCCCCCACAGCAGTCTTACTATCCACAGCAGTAATAAT GTCAGCTCAGAAGCTCAGCTGGTTCAGTTCAAAGGGAAAGAAATACCATCCCTGCAATAA GTGTACTAAACTCTACGCTCTGGTTAATATAACATACTCTACTATACCGAATGCAGTGTA TAATTTCTGTCTGCGGCTAAAAGCTGTGCCCCAGTTCCACATTTGATTGCACATGTGAGA TTTGCTGCTGTTGCAGTGTAAACACTAGGTATAATAGGATTTGAAATAAATTTCACTATG GTTCATAAAAGTTGAAAATGAGAAATTAAACCCACACTTGAAATGTTTGAAATTATTATA CTTATGTCTGCATAAGACATGATTGGAAAATCAGTTACTTACAATGATGGTTTAAGTACT GATATTCAAGAAAACTCAGTTTTCTTTCTCTTTTTTGGTTTATTGATTTGGTCTAATTTT CATTATGCTATTTTGCATAATCAAAACATTGTAAATCTTATAATTTAAAAATAAATTCCT AGTTGTCATTGTTATGTTTTGTCATTGATTCTCATTACTGTCTAATTTCTTTCTGATATT AGTCTCTCATTTTATATGTACATAAGTTGAACAGATACCGTGTTAAGTGCATGATTAGTA CAAGTTAATAGGTTCAAGTACATTTTATAGGCAAACCAAAAGAATAATACCGTAATTTAT CTTTCATATGCTGATGAGTAATTTTGACATTTATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCTGTGCACGCAGATGGACAAGTAAAAGACCGTTACCAGGCTCACCGGGACACCATCG CGCTCCTGTGTAAGCCCGAGCCAGAGCTGAATGCTGCCATCCCTTCAGCAAATCCGGCAA AGACCATGCAGGGCAGTGAGGTTGTAAGTGTCTTAAAATCCTTATTGACAAATCTTGATG AAGTAAAGAAGGAAAGAGAAGGGCTGGAGAATGACCTGAAATCAGTGAATTTTGACATGA CGAGCAAATTTTTGACTGCTCTGGCTCAAGATGGTGTGATAAATGAAGAAGCTATTTCTG TTACTGAACTGGATCGAATCTATGGAGGTCTTACAACTAAAGTCCAAGAATCTCTAAAGA AACAGGAAGAACTTCTTAAAAATATTCAGGTCTCACACCAGGAATTTTCAAAAATGAAAC AATCTAACAGTGAAGCCAACTTAAGAGAAGAAGTTTTGAAGAACTTAGCTACTGCATATG ACAACTTTGTTGAACTTGTAGCTAATTTGAAGGAGGGCACAAAGTTTTACAATGAACTGA CTGAAATGCTCGTCAGGTTCCAGAACAAATGCAGTGATATAGTGTTTGCACGGAAGACAG AAAGAGATGAACTCTTAAAGGACTTGCAACAAAGCATTGCCAGAGAACCCAGTGCACCTT CAATTCCTACCCCGGCCTATCAGTCCTCTCCAGCAGGGGGACACACGCCAACTCCTCCGA CTCCAGCACCGAGAACCATGCCGCCTACTAAGCCCCAGCCCCCAGCCCGGCCTCCACCTC CTGTGCTTCCAGCAAATCGAGCTCCTCCTGCTACTGCTCCAGCCCCAGCCCAAGCTCCAG CTCCAGCTCCAGCCCCAGCAGGCACTGGGACCACTGCACCAGCTCCATCACAGACTCCTG GTTCAGCTCCCCCTCCACAGGCCCAGGGACCCCCGTACCCCACCTATCCAGGGTATCCTG GGTATTGCCAAATGCCCATGCCCATGGGCTATAATCCGTACGCATACGGCCAGTATAACA TGCCATATCCACCAGTGTATCACCAGAGCCCTGGACAGGCTCCTTACCCAGGACCCCAGC AGCCTTCATACCCTTTCCCTCAGCCCCCACAGCAGTCTTACTATCCACAGCAGTAATAAT GTCAGCTCAGAAGCTCAGCTGGTTCAGTTCAAAGGGAAAGAAATACCATCCCTGCAATAA GTGTACTAAACTCTACGCTCTGGTTAATATAACATACTCTACTATACCGAATGCAGTGTA TAATTTCTGTCTGCGGCTAAAAGCTGTGCCCCAGTTCCACATTTGATTGCACATGTGAGA TTTGCTGCTGTTGCAGTGTAAACACTAGGTATAATAGGATTTGAAATAAATTTCACTATG GTTCATAAAAGTTGAAAATGAGAAATTAAACCCACACTTGAAATGTTTGAAATTATTATA CTTATGTCTGCATAAGACATGATTGGAAAATCAGTTACTTACAATGATGGTTTAAGTACT GATATTCAAGAAAACTCAGTTTTCTTTCTCTTTTTTGGTTTATTGATTTGGTCTAATTTT CATTATGCTATTTTGCATAATCAAAACATTGTAAATCTTATAATTTAAAAATAAATTCCT AGTTGTCATTGTTATGTTTTGTCATTGATTCTCATTACTGTCTAATTTCTTTCTGATATT AGTCTCTCATTTTATATGTACATAAGTTGAACAGATACCGTGTTAAGTGCATGATTAGTA CAAGTTAATAGGTTCAAGTACATTTTATAGGCAAACCAAAAGAATAATACCGTAATTTAT CTTTCATATGCTGATGAGTAATTTTGACATTTATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 961-1079, - strand, RNAz p=0.691517 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 961-1079, - strand, RNAz p=0.691517 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 139-391, gnl|bosTau2|chr22 (6070012-6070264) | |
| 139-391, gnl|canFam2|chr23 (7193210-7193492) | |
| 139-391, gnl|canFam2|chr23 (7193492-7193222) | |
| 139-391, gnl|danRer3|chr19 (69270819-69270544) | |
| 139-391, gnl|danRer3|chr19 (69270544-69270807) | |
| 139-391, gnl|echTel1|scaffold_168828 (957-1227) | |
| 139-391, gnl|echTel1|scaffold_168828 (1227-964) | |
| 139-391, gnl|fr1|chrUn (181402530-181402267) | |
| 139-391, gnl|fr1|chrUn (181402267-181402525) | |
| 139-391, gnl|galGal2|chr2 (43946615-43946878) | |
| 139-391, gnl|galGal2|chr2 (43946878-43946615) | |
| 139-391, gnl|hg17|chr15 (20683238-20683501) | |
| 139-391, gnl|hg17|chr3 (33868967-33869236) | |
| 139-391, gnl|Hg17|chr3 (33868982-33869234) | |
| 139-391, gnl|mm7|chr9 (113368332-113368065) | |
| 139-391, gnl|mm7|chr9 (113368065-113368328) | |
| 139-391, gnl|Mm7|chr9 (113368317-113368065) | |
| 139-391, gnl|monDom2|scaffold_170 (1214434-1214181) | |
| 139-391, gnl|monDom2|scaffold_170 (1214181-1214434) | |
| 139-391, gnl|oryCun1|scaffold_129686 (436-167) | |
| 139-391, gnl|oryCun1|scaffold_129686 (167-430) | |
| 139-391, gnl|panTro1|chr16_random (423106-422843) | |
| 139-391, gnl|panTro1|chr2 (34884887-34885159) | |
| 139-391, gnl|rheMac2|chr2 (176316430-176316702) | |
| 139-391, gnl|rheMac2|chr2 (176316702-176316439) | |
| 139-391, gnl|rn3|chr8_random (822614-822883) | |
| 139-391, gnl|rn3|chr8_random (822883-822620) | |
| 139-391, gnl|xenTro1|scaffold_906 (246367-246635) | |
| 139-391, gnl|xenTro1|scaffold_906 (246635-246373) | |
| 616-753, gnl|bosTau2|chr22 (6076387-6076524) | |
| 616-753, gnl|canFam2|chr23 (7203334-7203450) | |
| 616-753, gnl|dasNov1|scaffold_62599 (8258-8143) | |
| 616-753, gnl|echTel1|scaffold_286664 (12338-12223) | |
| 616-753, gnl|galGal2|chr2 (43951536-43951658) | |
| 616-753, gnl|hg17|chr3 (33880477-33880592) | |
| 616-753, gnl|Hg17|chr3 (33880498-33880635) | |
| 616-753, gnl|loxAfr1|scaffold_28719 (2254-2370) | |
| 616-753, gnl|mm7|chr9 (113363031-113362919) | |
| 616-753, gnl|Mm7|chr9 (113363011-113362869) | |
| 616-753, gnl|monDom2|scaffold_170 (1212843-1212734) | |
| 616-753, gnl|oryCun1|scaffold_149088 (3160-3278) | |
| 616-753, gnl|panTro1|chr2 (34896416-34896531) | |
| 616-753, gnl|rheMac2|chr2 (176327486-176327601) | |
| 961-1836, gnl|bosTau2|chr22 (6079043-6079922) | |
| 961-1836, gnl|Hg17|chr3 (33882846-33883719) | |
| 961-1836, gnl|Mm7|chr9 (113360906-113360065) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-391, gnl|bosTau2|chr22 (6070012-6070264) | |
| 139-391, gnl|canFam2|chr23 (7193210-7193492) | |
| 139-391, gnl|canFam2|chr23 (7193492-7193222) | |
| 139-391, gnl|danRer3|chr19 (69270819-69270544) | |
| 139-391, gnl|danRer3|chr19 (69270544-69270807) | |
| 139-391, gnl|echTel1|scaffold_168828 (957-1227) | |
| 139-391, gnl|echTel1|scaffold_168828 (1227-964) | |
| 139-391, gnl|fr1|chrUn (181402530-181402267) | |
| 139-391, gnl|fr1|chrUn (181402267-181402525) | |
| 139-391, gnl|galGal2|chr2 (43946615-43946878) | |
| 139-391, gnl|galGal2|chr2 (43946878-43946615) | |
| 139-391, gnl|hg17|chr15 (20683238-20683501) | |
| 139-391, gnl|hg17|chr3 (33868967-33869236) | |
| 139-391, gnl|Hg17|chr3 (33868982-33869234) | |
| 139-391, gnl|mm7|chr9 (113368332-113368065) | |
| 139-391, gnl|mm7|chr9 (113368065-113368328) | |
| 139-391, gnl|Mm7|chr9 (113368317-113368065) | |
| 139-391, gnl|monDom2|scaffold_170 (1214434-1214181) | |
| 139-391, gnl|monDom2|scaffold_170 (1214181-1214434) | |
| 139-391, gnl|oryCun1|scaffold_129686 (436-167) | |
| 139-391, gnl|oryCun1|scaffold_129686 (167-430) | |
| 139-391, gnl|panTro1|chr16_random (423106-422843) | |
| 139-391, gnl|panTro1|chr2 (34884887-34885159) | |
| 139-391, gnl|rheMac2|chr2 (176316430-176316702) | |
| 139-391, gnl|rheMac2|chr2 (176316702-176316439) | |
| 139-391, gnl|rn3|chr8_random (822614-822883) | |
| 139-391, gnl|rn3|chr8_random (822883-822620) | |
| 139-391, gnl|xenTro1|scaffold_906 (246367-246635) | |
| 139-391, gnl|xenTro1|scaffold_906 (246635-246373) | |
| 616-753, gnl|bosTau2|chr22 (6076387-6076524) | |
| 616-753, gnl|canFam2|chr23 (7203334-7203450) | |
| 616-753, gnl|dasNov1|scaffold_62599 (8258-8143) | |
| 616-753, gnl|echTel1|scaffold_286664 (12338-12223) | |
| 616-753, gnl|galGal2|chr2 (43951536-43951658) | |
| 616-753, gnl|hg17|chr3 (33880477-33880592) | |
| 616-753, gnl|Hg17|chr3 (33880498-33880635) | |
| 616-753, gnl|loxAfr1|scaffold_28719 (2254-2370) | |
| 616-753, gnl|mm7|chr9 (113363031-113362919) | |
| 616-753, gnl|Mm7|chr9 (113363011-113362869) | |
| 616-753, gnl|monDom2|scaffold_170 (1212843-1212734) | |
| 616-753, gnl|oryCun1|scaffold_149088 (3160-3278) | |
| 616-753, gnl|panTro1|chr2 (34896416-34896531) | |
| 616-753, gnl|rheMac2|chr2 (176327486-176327601) | |
| 961-1836, gnl|bosTau2|chr22 (6079043-6079922) | |
| 961-1836, gnl|Hg17|chr3 (33882846-33883719) | |
| 961-1836, gnl|Mm7|chr9 (113360906-113360065) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| sme (0.91631) | |
| gul (0.710353) | |
| csk (0.70373) | |
| cut (0.679694) | |
| sug (0.636456) | |
| cte (0.58548) | |
| ldo (0.582016) | |
| sto (0.539471) | |
| sin (0.524843) | |
| rec (0.519211) | |
| ova (0.516529) | |
| cje (0.495704) | |
| mgp (0.461361) | |
| fat (0.442282) | |
| ski (0.440205) | |
| amn (0.417711) | |
| tes (0.415628) | |
| kid (0.389206) | |
| thg (0.380373) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| tra (0.369276) | |
| sag (0.36543) | |
| lin (0.291206) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| spc (0.226732) | |
| hea (0.204499) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.91631) | |
| gul (0.710353) | |
| csk (0.70373) | |
| cut (0.679694) | |
| sug (0.636456) | |
| cte (0.58548) | |
| ldo (0.582016) | |
| sto (0.539471) | |
| sin (0.524843) | |
| rec (0.519211) | |
| ova (0.516529) | |
| cje (0.495704) | |
| mgp (0.461361) | |
| fat (0.442282) | |
| ski (0.440205) | |
| amn (0.417711) | |
| tes (0.415628) | |
| kid (0.389206) | |
| thg (0.380373) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| tra (0.369276) | |
| sag (0.36543) | |
| lin (0.291206) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| spc (0.226732) | |
| hea (0.204499) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cty (0.10408) | |
| jej (0.0989218) |