Ss1.1-mE4-MI-P-E4-ahf-e-04-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGAGTGATTTTCCCCAAGTCACAGGGCATGTGGATGGCCTCTTGAGTTAGTGTCCATG CCTGTCCCTTTCAAAGCTCACACATGCGGCACTGTGTGATGGTCACTGCTGCTGGAGACC GCACAGAGGAGTTCCACGGCCACACAGTGAACCTCCTGGGGAACTTGCCCCTCAAGTGTC TGGATGTCCTTCTCACCCTGGAGCCACACGAAGGCTCCCTGGAGTTCCTGGGAGTGAACA TGGATGTGATTCATGCCCTCCTCAGTTTCCTGGAGAAGCGTCTGCACCAGACGCACAGGC TGAAGGAGAGCGTGGCCCCTGTGCTGAGCGTGCTGACGGAGTGTGCCCGCATGCACCGCC CTGCCAGGAAGTTCCTAAAGGCCCAGGTGCTGCCCCCGCTGCGGGATGTGAGAACCCGGC CGGAGGTGGGGGAGTTGTTGCGGAACAAGCTGGTTCGCCTCATGACGCACTTGGACACCG ACGTGAAGAGGGTGGCCGCCGAGTTCCTCTTCGTCTTGTGCTCTGAAAGCGTGCCCCGAT TCATCAAGTACACAGGCTACGGGAATGCCGCCGGCCTCCTGGCTGCTAGGGGCCTCATGG CAGGGGGTCGGCCTGAGGGCCAGTACTCAGAGGATGAGGACACAGACACAGACGAGTACA AGGAAGCCAAGGCCAGCATAAACCCCGTGACTGGGAGGGTGGAGGAGAAGCCACCCAACC CCATGGAGGGCATGACAGAGGAGCAGAAGGAGCACGAGGCCATGAAGCTGGTGAACATGT TTGACAAGCTTTCCAGGCACAGAGTCATCCAGCCCATGGGGATGAGTCCCCGGGGTCAGC TCACATCCCTGCAGGATGCCATGTGTGAGACCATGGAGGGGCAGCTCTCCTCGGACCCTG ACTCGGACCCTGACTGAGAACGGCCACTCTTCTGCTCTTCAGAACTGGTGCTGCCTCCAC GGATGCCCTTGGGGCTGGGACCTGCGGAAGCCACATCTCTCCCTCCAGCTCGGAGACCCT TTTCCCTCTCCTCCAAAAGTTCTGCTTACGATTTGCCTTTGGTCCGTTTCCTCCTCTCTA GGATTGCGAGGGTCTTGTCGTGCTCTAACTCTAAGTGGTGTCTTTTCGGTACCTGAGGGC AGGGCTTCACTGAAGGCAAAACCCAGCGTTTGTGAGAGTGGGCGCTGAGAATGGGCGCAT GCAGACACAAGCACGTCCACGGTTGGCATGCTGGCCCAGAGCCGGTGCTGGGCAAGTGCC ACGTTGGGAAAGACCCTGCTGGAACTTCATGTGCTGATGTCAGAAATCTACTTCCCGTGT ACGCTCGGCTGTTTTTGTGCCTGCTGAGTGCAGGGCTCGTAGCCTCTTGTATTCTCGGTC CCGGCTCAGTGCCCAGGTTCTCACTGGCTGTGACGAATTCTGACCCTTCCTGCTGGCTTA GACTATAAATACATGAAGGAAAATGTCCCCCCTTGAAACCATAAGTCTAAATTTCTATCT TGCACCACAGAGCTCCATGGAAACATCATTCTGGAATAAAGAGTTCCAGGCAAGAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGAGTGATTTTCCCCAAGTCACAGGGCATGTGGATGGCCTCTTGAGTTAGTGTCCATG CCTGTCCCTTTCAAAGCTCACACATGCGGCACTGTGTGATGGTCACTGCTGCTGGAGACC GCACAGAGGAGTTCCACGGCCACACAGTGAACCTCCTGGGGAACTTGCCCCTCAAGTGTC TGGATGTCCTTCTCACCCTGGAGCCACACGAAGGCTCCCTGGAGTTCCTGGGAGTGAACA TGGATGTGATTCATGCCCTCCTCAGTTTCCTGGAGAAGCGTCTGCACCAGACGCACAGGC TGAAGGAGAGCGTGGCCCCTGTGCTGAGCGTGCTGACGGAGTGTGCCCGCATGCACCGCC CTGCCAGGAAGTTCCTAAAGGCCCAGGTGCTGCCCCCGCTGCGGGATGTGAGAACCCGGC CGGAGGTGGGGGAGTTGTTGCGGAACAAGCTGGTTCGCCTCATGACGCACTTGGACACCG ACGTGAAGAGGGTGGCCGCCGAGTTCCTCTTCGTCTTGTGCTCTGAAAGCGTGCCCCGAT TCATCAAGTACACAGGCTACGGGAATGCCGCCGGCCTCCTGGCTGCTAGGGGCCTCATGG CAGGGGGTCGGCCTGAGGGCCAGTACTCAGAGGATGAGGACACAGACACAGACGAGTACA AGGAAGCCAAGGCCAGCATAAACCCCGTGACTGGGAGGGTGGAGGAGAAGCCACCCAACC CCATGGAGGGCATGACAGAGGAGCAGAAGGAGCACGAGGCCATGAAGCTGGTGAACATGT TTGACAAGCTTTCCAGGCACAGAGTCATCCAGCCCATGGGGATGAGTCCCCGGGGTCAGC TCACATCCCTGCAGGATGCCATGTGTGAGACCATGGAGGGGCAGCTCTCCTCGGACCCTG ACTCGGACCCTGACTGAGAACGGCCACTCTTCTGCTCTTCAGAACTGGTGCTGCCTCCAC GGATGCCCTTGGGGCTGGGACCTGCGGAAGCCACATCTCTCCCTCCAGCTCGGAGACCCT TTTCCCTCTCCTCCAAAAGTTCTGCTTACGATTTGCCTTTGGTCCGTTTCCTCCTCTCTA GGATTGCGAGGGTCTTGTCGTGCTCTAACTCTAAGTGGTGTCTTTTCGGTACCTGAGGGC AGGGCTTCACTGAAGGCAAAACCCAGCGTTTGTGAGAGTGGGCGCTGAGAATGGGCGCAT GCAGACACAAGCACGTCCACGGTTGGCATGCTGGCCCAGAGCCGGTGCTGGGCAAGTGCC ACGTTGGGAAAGACCCTGCTGGAACTTCATGTGCTGATGTCAGAAATCTACTTCCCGTGT ACGCTCGGCTGTTTTTGTGCCTGCTGAGTGCAGGGCTCGTAGCCTCTTGTATTCTCGGTC CCGGCTCAGTGCCCAGGTTCTCACTGGCTGTGACGAATTCTGACCCTTCCTGCTGGCTTA GACTATAAATACATGAAGGAAAATGTCCCCCCTTGAAACCATAAGTCTAAATTTCTATCT TGCACCACAGAGCTCCATGGAAACATCATTCTGGAATAAAGAGTTCCAGGCAAGAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 559-676, + strand, RNAz p=0.79628 | |
| 794-912, + strand, RNAz p=0.861632 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 559-676, + strand, RNAz p=0.79628 | |
| 794-912, + strand, RNAz p=0.861632 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC094717, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 134-299, gnl|bosTau2|chr29 (45600622-45600457) | |
| 134-299, gnl|Hg17|chr11 (201193-201358) | |
| 134-299, gnl|Mm7|chr7 (137276696-137276862) | |
| 531-676, gnl|bosTau2|chr29 (45599258-45599113) | |
| 531-676, gnl|canFam2|chr18 (28356185-28356353) | |
| 531-676, gnl|danRer3|chr25 (7228699-7228543) | |
| 531-676, gnl|dasNov1|scaffold_38324 (12513-12379) | |
| 531-676, gnl|echTel1|scaffold_224818 (5381-5247) | |
| 531-676, gnl|fr1|chrUn (217418106-217417935) | |
| 531-676, gnl|galGal2|chr5 (1828287-1828449) | |
| 531-676, gnl|hg17|chr11 (202832-203003) | |
| 531-676, gnl|Hg17|chr11 (202836-202981) | |
| 531-676, gnl|loxAfr1|scaffold_85998 (4543-4409) | |
| 531-676, gnl|mm7|chr7 (137278554-137278725) | |
| 531-676, gnl|Mm7|chr7 (137278558-137278703) | |
| 531-676, gnl|oryCun1|scaffold_100178 (4008-3874) | |
| 531-676, gnl|panTro1|chr9 (253530-253701) | |
| 531-676, gnl|rheMac2|chr14 (23656-23827) | |
| 531-676, gnl|rn3|chr1 (201168507-201168678) | |
| 531-676, gnl|tetNig1|chr13 (4618818-4618656) | |
| 531-676, gnl|xenTro1|scaffold_682 (240050-240234) | |
| 794-1112, gnl|bosTau2|chr29 (45598219-45597898) | |
| 794-1112, gnl|Hg17|chr11 (204227-204566) | |
| 794-1112, gnl|Mm7|chr7 (137279571-137279883) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-299, gnl|bosTau2|chr29 (45600622-45600457) | |
| 134-299, gnl|Hg17|chr11 (201193-201358) | |
| 134-299, gnl|Mm7|chr7 (137276696-137276862) | |
| 531-676, gnl|bosTau2|chr29 (45599258-45599113) | |
| 531-676, gnl|canFam2|chr18 (28356185-28356353) | |
| 531-676, gnl|danRer3|chr25 (7228699-7228543) | |
| 531-676, gnl|dasNov1|scaffold_38324 (12513-12379) | |
| 531-676, gnl|echTel1|scaffold_224818 (5381-5247) | |
| 531-676, gnl|fr1|chrUn (217418106-217417935) | |
| 531-676, gnl|galGal2|chr5 (1828287-1828449) | |
| 531-676, gnl|hg17|chr11 (202832-203003) | |
| 531-676, gnl|Hg17|chr11 (202836-202981) | |
| 531-676, gnl|loxAfr1|scaffold_85998 (4543-4409) | |
| 531-676, gnl|mm7|chr7 (137278554-137278725) | |
| 531-676, gnl|Mm7|chr7 (137278558-137278703) | |
| 531-676, gnl|oryCun1|scaffold_100178 (4008-3874) | |
| 531-676, gnl|panTro1|chr9 (253530-253701) | |
| 531-676, gnl|rheMac2|chr14 (23656-23827) | |
| 531-676, gnl|rn3|chr1 (201168507-201168678) | |
| 531-676, gnl|tetNig1|chr13 (4618818-4618656) | |
| 531-676, gnl|xenTro1|scaffold_682 (240050-240234) | |
| 794-1112, gnl|bosTau2|chr29 (45598219-45597898) | |
| 794-1112, gnl|Hg17|chr11 (204227-204566) | |
| 794-1112, gnl|Mm7|chr7 (137279571-137279883) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| duo (0.345602) | |
| cag (0.302389) | |
| cly (0.241284) | |
| eru (0.240096) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cki (0.165235) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| sug (0.127291) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| cag (0.302389) | |
| cly (0.241284) | |
| eru (0.240096) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cki (0.165235) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| sug (0.127291) | |
| eje (0.0988338) |