Non-Coding RNA Search

Ss1.1-mE6-MI-P-E6-ahj-g-09-1-UM.s1.3

Sequence:


               
               AAAGAGATCAGAACACAAACACAGGAGGAGACACAGAACAAAGAGAAGGAACCGGCAAAA
CCTGAACCCACAGAATCCTAAAACATCATTTACCCTTGTGTATTCGCAAGACCAGAATGT
GAAGACACGTAGAAGAAAACGAACGCTGCTGACGAGACTCAAGACCCATCTTTCAGAACT
TGGAGAACCGAAGCCCCTGCCCAGCAACTGCTCTCCTTGCTAAAGGCCCCCCGACAATCC
TGAGGCGTCATCGGGAGCGATAGCCAGTTAACATTCCCTCTTTCCAACACCGCCCTCGAG
TTTCCCCTCGGTACTTTATAATGTCTCTGATTTAAGGTCCTCAATTAGCCTGGAACTGGA
GTTGGCAATACCTAGTTCTGCTTCTCAAACTGGAGTATCCTTCTTTATGTATTTATATGT
ATGTTTTAAGTAACCCTCCTTGTGTATCTATTGTATATTTTTTTTCTCTTGATGTTTAAG
GAAATGGACAGTATAGTGCATTCCTTTTGTATCGCATAGTACACGACGGGGCATGCAGCC
ACGGTGAAGTTTCAGGAAGCTTTCTGTGTCAGTTACAACCTGTGAACACAGAGCTTCTTA
GAAATAACATTCCTGATCAGAAGCTACCCTTCCTATTTTTAAAATTCACGAAGGATTAGG
TCCGTGTTTATAATATCGCTCTGAAATTGGTCACTTTCCTATGATGGACCGTACGCCATA
AAATAAGTGTTTTGGGGTGGGGGGAGTGCATACAGAATGTTCCATTGTTCCTAGGAAATT
GTTTTTCTAGCCCCCACTGGAAGGAAGTTTTTTCAGTAGCAGATTAAATTGAAGTCTTCC
TCCTAATTGTTATGGTTGTTTGGACAGATGAGTGTGCTTCATTTTGAGGCAATGTAGTGA
AATGTTTTTCATGTTATCAAGAAAAGAATTGACTGTTTTCGAGTCTATCTTATATGCTGG
ACCACATTCACACACAGCATGGAATGAGTCAGGTTCTCTACAAATGGTATTTTGGTGGAT
GCTGGATTGTGTCTGTGCCATATTTGTGCCCACGCTTTTATGAACAATGTAGCATTATGT
TCATTTGGAGAAATTGTGATTTGACAACTGATTTAAATAAAATATTTGCTTCACATAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGATCAGAACACAAACACAGGAGGAGACACAGAACAAAGAGAAGGAACCGGCAAAA
CCTGAACCCACAGAATCCTAAAACATCATTTACCCTTGTGTATTCGCAAGACCAGAATGT
GAAGACACGTAGAAGAAAACGAACGCTGCTGACGAGACTCAAGACCCATCTTTCAGAACT
TGGAGAACCGAAGCCCCTGCCCAGCAACTGCTCTCCTTGCTAAAGGCCCCCCGACAATCC
TGAGGCGTCATCGGGAGCGATAGCCAGTTAACATTCCCTCTTTCCAACACCGCCCTCGAG
TTTCCCCTCGGTACTTTATAATGTCTCTGATTTAAGGTCCTCAATTAGCCTGGAACTGGA
GTTGGCAATACCTAGTTCTGCTTCTCAAACTGGAGTATCCTTCTTTATGTATTTATATGT
ATGTTTTAAGTAACCCTCCTTGTGTATCTATTGTATATTTTTTTTCTCTTGATGTTTAAG
GAAATGGACAGTATAGTGCATTCCTTTTGTATCGCATAGTACACGACGGGGCATGCAGCC
ACGGTGAAGTTTCAGGAAGCTTTCTGTGTCAGTTACAACCTGTGAACACAGAGCTTCTTA
GAAATAACATTCCTGATCAGAAGCTACCCTTCCTATTTTTAAAATTCACGAAGGATTAGG
TCCGTGTTTATAATATCGCTCTGAAATTGGTCACTTTCCTATGATGGACCGTACGCCATA
AAATAAGTGTTTTGGGGTGGGGGGAGTGCATACAGAATGTTCCATTGTTCCTAGGAAATT
GTTTTTCTAGCCCCCACTGGAAGGAAGTTTTTTCAGTAGCAGATTAAATTGAAGTCTTCC
TCCTAATTGTTATGGTTGTTTGGACAGATGAGTGTGCTTCATTTTGAGGCAATGTAGTGA
AATGTTTTTCATGTTATCAAGAAAAGAATTGACTGTTTTCGAGTCTATCTTATATGCTGG
ACCACATTCACACACAGCATGGAATGAGTCAGGTTCTCTACAAATGGTATTTTGGTGGAT
GCTGGATTGTGTCTGTGCCATATTTGTGCCCACGCTTTTATGAACAATGTAGCATTATGT
TCATTTGGAGAAATTGTGATTTGACAACTGATTTAAATAAAATATTTGCTTCACATAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               417-822, gnl|bosTau2|chr5 (29018695-29019101)
               

               
               417-822, gnl|Hg17|chr6 (151769331-151769702)
               

               
               417-822, gnl|Mm7|chr10 (5988363-5987999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               417-822, gnl|bosTau2|chr5 (29018695-29019101)
               

               
               417-822, gnl|Hg17|chr6 (151769331-151769702)
               

               
               417-822, gnl|Mm7|chr10 (5988363-5987999)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               pro (0.512033)
               

               
               spc (0.453463)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               ebs (0.354904)
               

               
               liv (0.292569)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               spc (0.453463)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               gul (0.355177)
               

               
               ebs (0.354904)
               

               
               liv (0.292569)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	417-822, gnl\|bosTau2\|chr5 (29018695-29019101)
	417-822, gnl\|Hg17\|chr6 (151769331-151769702)
	417-822, gnl\|Mm7\|chr10 (5988363-5987999)

	pro (0.512033)
	spc (0.453463)
	aor (0.390549)
	elu (0.385356)
	gul (0.355177)
	ebs (0.354904)
	liv (0.292569)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	mgp (0.230681)
	hea (0.204499)
	cut (0.169924)
	ski (0.146735)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)
	clu (0.119646)
	cty (0.10408)