Non-Coding RNA Search

Ss1.1-mE6-MI-P-E6-ahk-e-08-1-UM.s1.3

Sequence:


               
               TGAAACAAAGGGGTCGAAGACTATTACACTAGTACGTCTTGTTTTTCACCTGTATTTTAG
ATTCTGATATATGTGTAGTTCAACTCAGAATTCCTTCCATCAAATTAATCAGCATTGTCC
AACACTTGTCTGTCAAAGTCACTTGGTATTTGTTTTCATCTGAGAAAGTTGAGTACATCA
TTAGAGAATGGATTTTTTCTTTTCCTCATTCAGCCTAAAAGCAAGAAGTTTCCTCAGTCT
TAGCCCTTTTATATCTTATATTAGGACTAGCAGGACATATGAAAAAAGATTAAAAAGTGT
TTGTCAAGACTAAAGAAAGGAAGCAGGTTCTAAAAGCCATAACAGCCAGTCCAGTTTGCT
CTGCATATGGCCTCATACCAGTAGCTGTTAGAGTTTCCCACCTTCACTTTCCACAGAGAA
CAGCAGTCAGTCTCAAAGTCTGTCCATCAGAAAAGTGACAGTGCCAAGACTCAAGAGCTG
AGACGATCCCTTTGGCAAAATGTAGAATACTCTTCACTGCCACTGCCACCGCCACTACCA
AATGGGGTTTTTAGAGCTTTGAAACACAATCTTTGTAAAATAATCAGAACATCCCTGTGA
CTCACCTGCCTTCTCCCCAGGCCCAAGTTTGGCAAATACTGGCTGAAAGGTAAGATGGGC
TCCCTCCTCTCCAGCATGAGATGCTGCACAGCTTCACAGGTGACCGAAGTTGGACTTTTG
ACTCTGAAATAGCTATGATTCAGGAAAGTTAAAATCCTAGTGGGGGGCAGAGAACCTTTT
TAACTGTTCCCTTTGATGCCAAGAAAGGGACTATTATTGTGAATGCTTATGCTACACTTA
CTGTAAGAATGATCTTGTCTATTGTCTTCTCCTGGGATGGACGGTGGACTATATTTTATT
ATAGGTTTTGAAAGACGTCTGTAATGTTGCATAATAGGCTGTCCATATTAATATCTAAAT
AAATAGTATATTAAACTGTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACAAAGGGGTCGAAGACTATTACACTAGTACGTCTTGTTTTTCACCTGTATTTTAG
ATTCTGATATATGTGTAGTTCAACTCAGAATTCCTTCCATCAAATTAATCAGCATTGTCC
AACACTTGTCTGTCAAAGTCACTTGGTATTTGTTTTCATCTGAGAAAGTTGAGTACATCA
TTAGAGAATGGATTTTTTCTTTTCCTCATTCAGCCTAAAAGCAAGAAGTTTCCTCAGTCT
TAGCCCTTTTATATCTTATATTAGGACTAGCAGGACATATGAAAAAAGATTAAAAAGTGT
TTGTCAAGACTAAAGAAAGGAAGCAGGTTCTAAAAGCCATAACAGCCAGTCCAGTTTGCT
CTGCATATGGCCTCATACCAGTAGCTGTTAGAGTTTCCCACCTTCACTTTCCACAGAGAA
CAGCAGTCAGTCTCAAAGTCTGTCCATCAGAAAAGTGACAGTGCCAAGACTCAAGAGCTG
AGACGATCCCTTTGGCAAAATGTAGAATACTCTTCACTGCCACTGCCACCGCCACTACCA
AATGGGGTTTTTAGAGCTTTGAAACACAATCTTTGTAAAATAATCAGAACATCCCTGTGA
CTCACCTGCCTTCTCCCCAGGCCCAAGTTTGGCAAATACTGGCTGAAAGGTAAGATGGGC
TCCCTCCTCTCCAGCATGAGATGCTGCACAGCTTCACAGGTGACCGAAGTTGGACTTTTG
ACTCTGAAATAGCTATGATTCAGGAAAGTTAAAATCCTAGTGGGGGGCAGAGAACCTTTT
TAACTGTTCCCTTTGATGCCAAGAAAGGGACTATTATTGTGAATGCTTATGCTACACTTA
CTGTAAGAATGATCTTGTCTATTGTCTTCTCCTGGGATGGACGGTGGACTATATTTTATT
ATAGGTTTTGAAAGACGTCTGTAATGTTGCATAATAGGCTGTCCATATTAATATCTAAAT
AAATAGTATATTAAACTGTCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               826-943, - strand, RNAz p=0.741244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               826-943, - strand, RNAz p=0.741244

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-979, gnl|bosTau2|chr6 (10341116-10342029)
               

               
               49-979, gnl|Hg17|chr4 (99721194-99722188)
               

               
               49-979, gnl|Mm7|chr3 (138735362-138734451)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-979, gnl|bosTau2|chr6 (10341116-10342029)
               

               
               49-979, gnl|Hg17|chr4 (99721194-99722188)
               

               
               49-979, gnl|Mm7|chr3 (138735362-138734451)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fhi (0.508733)
               

               
               sme (0.305437)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               sme (0.305437)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	49-979, gnl\|bosTau2\|chr6 (10341116-10342029)
	49-979, gnl\|Hg17\|chr4 (99721194-99722188)
	49-979, gnl\|Mm7\|chr3 (138735362-138734451)

	fhi (0.508733)
	sme (0.305437)
	ova (0.258264)
	ece (0.229305)
	fcc (0.197785)
	col (0.195008)
	sto (0.179824)
	kid (0.129735)
	sug (0.127291)
	pgl (0.118483)
	spc (0.113366)
	jej (0.0989218)