Non-Coding RNA Search

Ss1.1-mE6-MI-P-E6-ahk-g-11-1-UM.s1.3

Sequence:


               
               TGGGATGTGATGTCACATTGTATGTCTTTCCTCACCTTTCATCGAGAGCCAATGGAAAGC
ATATAGTTTCTAAATATTGGCACAAAGCCCGTCAGTGGTCATTAACAGCGCAGACTTTTA
CGGTCTTTGAATCCCATCAACACTTGGTTGCCTTACAGCTTTTATGGAGTTCCAAAAGTA
AAATACTCCTTTGGGGTTCCTGCATATACGTCTTGCTTAAAAAAAAGAAGAGCTATGTAG
CAGTTATTTTTTATTTAAGGACTGAAAGACATCTTCATTTCTACATAGGAACAGATGCAG
TTGTGTTTTTGTTTTTTGTCTTTTTCTAATGCAGTTTGATTTATCAAGTTAATATGCAGA
TGACAAGACTGGCTTTGACTTTGTTACTCTTAAGTTCTGCCGAGTTGGATTTGTGGGATC
AATTTTAGGATTTTTTGGTTTTGTTTTGAAAGACGAAGATAATGTGTAAGAATTTCTCTT
AGAAATAAAAATTGGTATGTAGCCAATGTTTCTTACCTACAGTTTGTTTTCCATAGACCT
TTTGACTTTTAAACATAATTTGTCTTGGAACTAATAATTTATTTTCAGGATTCTCACTTC
TCTGCAGATGATTCGAGTTCAAAAATATATAACAGATTAATACATTAAACAAATTGCCAT
TGTAGAACAAATATAGATGCAGTCATACTAACTTTTATATTTAAGGATGTCTGTATATAA
AGTATATAATCATTGGTGGAAGTCTGAGAAAGCTATATTGCCAGGACTTCTAATGTTTAA
CTATAGTTTCTTAGAGCTCTTATCGTGCCTCTTACTCACATTAACACAATGTAGGGCAGG
GCCATCGAATTTGCCAACCGTTTCCCGATTAATGACTATATACCTTCATTCCTTTGCAGA
GCAATTTACTAATCATGAGGTTGGAAAAATCTGTCCTTCTCTTGTTCATTATGTCTTAAT
AATCATAAAAGTCTAAAATGTGACAGAAAGTCTGTCTCAGTGAAGAAAACTTCAAAAGCT
ACTCTATCCCATTCTGTATTTGAATGTTACAACTTGAGATTTGTATATTTGTGTGTTTTT
TATTAAAATAATGTGTTTTTATTAAAATAATGTACAAAGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATGTGATGTCACATTGTATGTCTTTCCTCACCTTTCATCGAGAGCCAATGGAAAGC
ATATAGTTTCTAAATATTGGCACAAAGCCCGTCAGTGGTCATTAACAGCGCAGACTTTTA
CGGTCTTTGAATCCCATCAACACTTGGTTGCCTTACAGCTTTTATGGAGTTCCAAAAGTA
AAATACTCCTTTGGGGTTCCTGCATATACGTCTTGCTTAAAAAAAAGAAGAGCTATGTAG
CAGTTATTTTTTATTTAAGGACTGAAAGACATCTTCATTTCTACATAGGAACAGATGCAG
TTGTGTTTTTGTTTTTTGTCTTTTTCTAATGCAGTTTGATTTATCAAGTTAATATGCAGA
TGACAAGACTGGCTTTGACTTTGTTACTCTTAAGTTCTGCCGAGTTGGATTTGTGGGATC
AATTTTAGGATTTTTTGGTTTTGTTTTGAAAGACGAAGATAATGTGTAAGAATTTCTCTT
AGAAATAAAAATTGGTATGTAGCCAATGTTTCTTACCTACAGTTTGTTTTCCATAGACCT
TTTGACTTTTAAACATAATTTGTCTTGGAACTAATAATTTATTTTCAGGATTCTCACTTC
TCTGCAGATGATTCGAGTTCAAAAATATATAACAGATTAATACATTAAACAAATTGCCAT
TGTAGAACAAATATAGATGCAGTCATACTAACTTTTATATTTAAGGATGTCTGTATATAA
AGTATATAATCATTGGTGGAAGTCTGAGAAAGCTATATTGCCAGGACTTCTAATGTTTAA
CTATAGTTTCTTAGAGCTCTTATCGTGCCTCTTACTCACATTAACACAATGTAGGGCAGG
GCCATCGAATTTGCCAACCGTTTCCCGATTAATGACTATATACCTTCATTCCTTTGCAGA
GCAATTTACTAATCATGAGGTTGGAAAAATCTGTCCTTCTCTTGTTCATTATGTCTTAAT
AATCATAAAAGTCTAAAATGTGACAGAAAGTCTGTCTCAGTGAAGAAAACTTCAAAAGCT
ACTCTATCCCATTCTGTATTTGAATGTTACAACTTGAGATTTGTATATTTGTGTGTTTTT
TATTAAAATAATGTGTTTTTATTAAAATAATGTACAAAGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               259-377, - strand, RNAz p=0.903275

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-377, - strand, RNAz p=0.903275

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               37-1120, gnl|bosTau2|chr16 (52866231-52867289)
               

               
               37-1120, gnl|Hg17|chr1 (209299965-209298905)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-1120, gnl|bosTau2|chr16 (52866231-52867289)
               

               
               37-1120, gnl|Hg17|chr1 (209299965-209298905)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ret (0.514933)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	37-1120, gnl\|bosTau2\|chr16 (52866231-52867289)
	37-1120, gnl\|Hg17\|chr1 (209299965-209298905)

	ret (0.514933)
	lin (0.291206)
	kid (0.259471)
	cbe (0.239234)
	mgp (0.230681)
	gul (0.177588)
	lyg (0.133103)
	thg (0.126791)
	bla (0.124347)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)