Non-Coding RNA Search

Ss1.1-mE6-MI-P-E6-ahl-d-11-1-UM.s1.3

Sequence:


               
               AAAAAGCAGAGTTTTACTATATATAAAATAGATAACTAATAAGGACCTAATGTACAGCAC
AGGGAAATCTACTCAACATACTGTAATAACCTATATGGAAAAAAAGAATGGATATATGTA
TATGTAAAACTGATTCACTTTGCTTTACACCTGAAACTAATACACTGTAAGTCAAAAATA
AATTAAATCCAACTCAAGAACCAAAACCAAAAGCAAAAGCAAATAAATAGAGTTAGATTT
TTGCACATTTTAAAAAGTTGGTATCAATTAAACTGAACCCATACCCTTTCTAAGAGGCCA
TTGATGCAATGTTGAAAACATTTGGATGGCTATCTGCATTCTCCTTAGAAAAATTTAAGG
ACAATTTGGTCCTAAGGGTTTAAATGATTGATAAGGCTTCTAACAACAACCACAAAAACA
AGATAAAATACTAGAATAGAATCAGGCAGGAAAATTCCATAGAGTATATTAAAAGAGAGG
AATTTTCCTAGAATATGCATTTGCTTTAGTATCATAAAATATTACCCTTTGGGTCTATAC
TTTTAAAGTTGAAAAGCAATAAAACATGAATGGCAAATCATGCCACAAACCTAGAGCTAT
GTCTAAAGTCCTTAGAGTTACTGTGATATTTTCCAAGATGAACAGGGGTATCATTGAAGA
GGTGGGTACTACTTAGTAGCTGATATTTTTGCTTCTTTATCAGGCTTTTTGCTCACTGGC
ATCCTGTTGTCAAAAGTAACCATGTTTTAGACACGCTTTTCTGAAGTTTGTTTTTAATAA
ATGAATACTCATTTTCACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCAGAGTTTTACTATATATAAAATAGATAACTAATAAGGACCTAATGTACAGCAC
AGGGAAATCTACTCAACATACTGTAATAACCTATATGGAAAAAAAGAATGGATATATGTA
TATGTAAAACTGATTCACTTTGCTTTACACCTGAAACTAATACACTGTAAGTCAAAAATA
AATTAAATCCAACTCAAGAACCAAAACCAAAAGCAAAAGCAAATAAATAGAGTTAGATTT
TTGCACATTTTAAAAAGTTGGTATCAATTAAACTGAACCCATACCCTTTCTAAGAGGCCA
TTGATGCAATGTTGAAAACATTTGGATGGCTATCTGCATTCTCCTTAGAAAAATTTAAGG
ACAATTTGGTCCTAAGGGTTTAAATGATTGATAAGGCTTCTAACAACAACCACAAAAACA
AGATAAAATACTAGAATAGAATCAGGCAGGAAAATTCCATAGAGTATATTAAAAGAGAGG
AATTTTCCTAGAATATGCATTTGCTTTAGTATCATAAAATATTACCCTTTGGGTCTATAC
TTTTAAAGTTGAAAAGCAATAAAACATGAATGGCAAATCATGCCACAAACCTAGAGCTAT
GTCTAAAGTCCTTAGAGTTACTGTGATATTTTCCAAGATGAACAGGGGTATCATTGAAGA
GGTGGGTACTACTTAGTAGCTGATATTTTTGCTTCTTTATCAGGCTTTTTGCTCACTGGC
ATCCTGTTGTCAAAAGTAACCATGTTTTAGACACGCTTTTCTGAAGTTTGTTTTTAATAA
ATGAATACTCATTTTCACAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-223, gnl|bosTau2|chr28 (10615928-10615714)
               


               
               427-802, gnl|bosTau2|chr10 (30319122-30318747)
               

               
               427-802, gnl|Hg17|chr15 (62443902-62443559)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-223, gnl|bosTau2|chr28 (10615928-10615714)
               


               
               427-802, gnl|bosTau2|chr10 (30319122-30318747)
               

               
               427-802, gnl|Hg17|chr15 (62443902-62443559)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               thg (0.507164)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	15-223, gnl\|bosTau2\|chr28 (10615928-10615714)

	427-802, gnl\|bosTau2\|chr10 (30319122-30318747)
	427-802, gnl\|Hg17\|chr15 (62443902-62443559)

	thg (0.507164)
	ova (0.258264)
	med (0.232504)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	lin (0.145603)
	tra (0.123092)
	ecc (0.115035)
	cty (0.10408)