Non-Coding RNA Search

Ss1.1-mE6-MI-P-E6-ahm-e-10-1-UM.s1.3

Sequence:


               
               TTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATG
GGCATGAATATGGGCATGGATGGGCAATGGCACTACATGTAACCTTCATCATGTAAAGCA
ATCGCAAAGCCAGGGGGAAGTAAGTACAGTCGGGTGCGACCTGTCTTCACTGTCACTGCA
AAGACTTTCTGAACTTTGACCAGATGTTGACACTCAATATGAAATTCCAGACAGCTGTGA
TTATTTTTTACTTTCTGTCATTTTTTTCATCAAGCAACAGAGGACCAATGAGACAAGAAC
ACAAATGTGAAATCATGGGCTCACTGAGACAATTCTGTCCATGTAAAGATCCTCTGGAAA
AAGACTCCGAGAGTTATAACTACTGTAGTATAAACATAGGAACTAAGTTAAACTTGTACA
TTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAAATATAT
CCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTTTTGGTTCATCAGTG
AATTCACTATCCAGGAGAGACTGTGGTATATTTTAAACCTGTTGGGCCAATGAGAAAAGA
ACCACGCTGGAGACCATGGTGAATGGTTTTGGCTGAACCTCATCCTTCAGACTCCGGCTT
CAAGAATGTGTTTTCATGCCCGGCCTTTGTTCCTCCATAAATGTGTCCTTTAGTTTCAAA
CAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATTATTTGGGGGGACTCTTC
TTCAAAGAGCTTGCCAATGAAGATTTAAAGACAGAACAGGAGCTTCTTCCAGGAGTTCTA
AGCCTTGGCTGTGGACAAAACAATCTTAAGTTGGGCAGCTTTCCTCAACACACACAGAAA
AGTTATTAATGGTGGTAGCACCATAACTAGGACTTTATCAGAAACTCAAAGCTTGGGGGA
TAAAAAGGAGTAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTATTAATTGTT
TCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTAG
TATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGAATTCTTCTTTTCTCAGCACGT
GTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATAC
TTGTATGAGGACTGTGACGTTATGTTAAAAAAAAAGGTGTTAAGTCACAAAATGCGGTAA
TAAATATTTCATTTTTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATG
GGCATGAATATGGGCATGGATGGGCAATGGCACTACATGTAACCTTCATCATGTAAAGCA
ATCGCAAAGCCAGGGGGAAGTAAGTACAGTCGGGTGCGACCTGTCTTCACTGTCACTGCA
AAGACTTTCTGAACTTTGACCAGATGTTGACACTCAATATGAAATTCCAGACAGCTGTGA
TTATTTTTTACTTTCTGTCATTTTTTTCATCAAGCAACAGAGGACCAATGAGACAAGAAC
ACAAATGTGAAATCATGGGCTCACTGAGACAATTCTGTCCATGTAAAGATCCTCTGGAAA
AAGACTCCGAGAGTTATAACTACTGTAGTATAAACATAGGAACTAAGTTAAACTTGTACA
TTTCTGTTGATCACTCCGTTATGTTGCCTCAAATAGTTTTAGAAGAGAAAAAAAATATAT
CCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTTTTGGTTCATCAGTG
AATTCACTATCCAGGAGAGACTGTGGTATATTTTAAACCTGTTGGGCCAATGAGAAAAGA
ACCACGCTGGAGACCATGGTGAATGGTTTTGGCTGAACCTCATCCTTCAGACTCCGGCTT
CAAGAATGTGTTTTCATGCCCGGCCTTTGTTCCTCCATAAATGTGTCCTTTAGTTTCAAA
CAGATCTTTATAGTTTGTGCTTCATAAGCCAATTCTTATTATTATTTGGGGGGACTCTTC
TTCAAAGAGCTTGCCAATGAAGATTTAAAGACAGAACAGGAGCTTCTTCCAGGAGTTCTA
AGCCTTGGCTGTGGACAAAACAATCTTAAGTTGGGCAGCTTTCCTCAACACACACAGAAA
AGTTATTAATGGTGGTAGCACCATAACTAGGACTTTATCAGAAACTCAAAGCTTGGGGGA
TAAAAAGGAGTAAGAGAATACTGTAACAAACTTCGTACAGAGTTCGGTCTATTAATTGTT
TCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAAAAAAAAAGAATGTTTTTGCTAG
TATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGAATTCTTCTTTTCTCAGCACGT
GTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATAC
TTGTATGAGGACTGTGACGTTATGTTAAAAAAAAAGGTGTTAAGTCACAAAATGCGGTAA
TAAATATTTCATTTTTGAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               42-188, gnl|bosTau2|chr10 (18550504-18550359)
               

               
               42-188, gnl|Hg17|chr15 (34974307-34974161)
               

               
               42-188, gnl|Mm7|chr2 (115607754-115607610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-188, gnl|bosTau2|chr10 (18550504-18550359)
               

               
               42-188, gnl|Hg17|chr15 (34974307-34974161)
               

               
               42-188, gnl|Mm7|chr2 (115607754-115607610)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fco (0.471624)
               

               
               fli (0.202881)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               fli (0.202881)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	42-188, gnl\|bosTau2\|chr10 (18550504-18550359)
	42-188, gnl\|Hg17\|chr15 (34974307-34974161)
	42-188, gnl\|Mm7\|chr2 (115607754-115607610)

	fco (0.471624)
	fli (0.202881)
	liv (0.146284)
	spl (0.143184)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)