Ss1.1-mE7-MI-P-E7-agz-a-12-1-UM.s1.3
|
CCTTTCCTCCCCAGAACCAAATTTACTGGACAATCTTTCTCATTGCTTCTCCATTGTGTC
CAGGCTGTCTGGGCTGGTTTGTGTCACTTCCCCATGTTGTTCTTGCTGTGCAGCCAAGAA
GGTCTTTCTTATCTCCTGTTCTCTACCAAGGCAGGGGGATAGTTGGTCTTATCGTGCCTA
TGGCTGCCTATTCAGGGCTCAAAAGGCCAGGGTCTCTTTGAGGGGGAAATAACCCTAACA
TCTGTGAAGTTTTTCTCCATTTTTAAATTATTTCAGAATCATCTCATGACCCTTGTGTGC
CTCTTTGTGAAGCCCTGTTTAGCAATTTCAGGGGAGTCAAAAACCTTGGAACCTTCTTTT
CCATTAACCCAAGACACTAAAAATGGACAGACTGAGCTCACTGTTTCCGGGTTCAGAGTT
TTGGTGGGGGTAGGTATGAAGAAAGACCTATTTCCTGGGTCTCTGCTCGATATCCTCCCT
TAGGCTTATCCTGTTCAGTGAATGTCCAGTGCTGAGTGTCGCCCCGTTACCCTCTCATGC
GTTTACGTGTCTCTTTCAATTAGGAGGGTTGTGTTGGTGGCACCTCCACTCTTGTGTTTG
TTGAATAGTGCAGCAACTTTAATCAGTGGGTGTCTCTTAGATGAAGGAGGTTCAAGGGGC
TGTGTTTTCCTAGTTATATTCTGGAGAAGCATTTCCTTTCTTGCAGCTCCATCAAGTTGC
TGCATTTAAAGCATGCCATTACTTTGTAATGGCCCCCTTATTTGACCTGAAATTAAAGGG
TTTAGAGTTTTTAACCTGATTTGTGGAGCAGAGAGGTTGAACGCACTTAACTCTTGTTCA
GTACCCACATTGCCTTGCTGCCTGGGTATCTGGCCCCTTTTCATAAGCATTTTTTTTTTT
TTTCAATCCACCAGCTCTTCAACAAAAAAGCTGCTATTACATATTGTCATTTATGAAGGA
AGCTGGAGAGTCTTGGCTTTAGCTGTGATAGGTTTGCCCACCTGAATGCTGTGACACCCA
TTGCCCAGGTATCTTGAAAGCAAATTGCTCTCCCACCACTTCTCTTCCCTCTGCCCATCA
TTCCTTTGACAGTGCCAGGGAGGAGTCCCCATTCATCGGTGAGTGGGCACCAGCTCTTTT
GTTTGTGAAGGGGCAGTTTGAGAGTGAAACAGGAGGACATCACTTCCTCCCTCAGCCCCT
GTTTGGATGTGTACACTCTGGCTGAAGGGAGTCCTTTGATTTAGTTTCAAAATAGAGTCT
CTCTCTTGGATTTCCTTCTTGACTCTTTACCTATGGGTCCATTTCCCCCCGCCCCCCATT
GCTTCCCCTTCCAGGCAGCTCTATTCTTACAGAGCCATGGCAGGACATTTAAAAATTCCA
ATGAAAACACTAAAAGGAAAGTGTAGAATCACTAGCGACTAACCACTGGGAACCTATTTT
CTCAATCTTCCTCTATGTTGTGTTCTTTGTATTCTCAAGATGATAATATATTATGTATTT
GAATTGCTGAAAAATTGAAAATGAGGTTTAAGATATATGTATATAAAGCATATGCTGTAT
TGGTGCAATAATGGTAATTAAAAATATGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTTTCCTCCCCAGAACCAAATTTACTGGACAATCTTTCTCATTGCTTCTCCATTGTGTC
CAGGCTGTCTGGGCTGGTTTGTGTCACTTCCCCATGTTGTTCTTGCTGTGCAGCCAAGAA
GGTCTTTCTTATCTCCTGTTCTCTACCAAGGCAGGGGGATAGTTGGTCTTATCGTGCCTA
TGGCTGCCTATTCAGGGCTCAAAAGGCCAGGGTCTCTTTGAGGGGGAAATAACCCTAACA
TCTGTGAAGTTTTTCTCCATTTTTAAATTATTTCAGAATCATCTCATGACCCTTGTGTGC
CTCTTTGTGAAGCCCTGTTTAGCAATTTCAGGGGAGTCAAAAACCTTGGAACCTTCTTTT
CCATTAACCCAAGACACTAAAAATGGACAGACTGAGCTCACTGTTTCCGGGTTCAGAGTT
TTGGTGGGGGTAGGTATGAAGAAAGACCTATTTCCTGGGTCTCTGCTCGATATCCTCCCT
TAGGCTTATCCTGTTCAGTGAATGTCCAGTGCTGAGTGTCGCCCCGTTACCCTCTCATGC
GTTTACGTGTCTCTTTCAATTAGGAGGGTTGTGTTGGTGGCACCTCCACTCTTGTGTTTG
TTGAATAGTGCAGCAACTTTAATCAGTGGGTGTCTCTTAGATGAAGGAGGTTCAAGGGGC
TGTGTTTTCCTAGTTATATTCTGGAGAAGCATTTCCTTTCTTGCAGCTCCATCAAGTTGC
TGCATTTAAAGCATGCCATTACTTTGTAATGGCCCCCTTATTTGACCTGAAATTAAAGGG
TTTAGAGTTTTTAACCTGATTTGTGGAGCAGAGAGGTTGAACGCACTTAACTCTTGTTCA
GTACCCACATTGCCTTGCTGCCTGGGTATCTGGCCCCTTTTCATAAGCATTTTTTTTTTT
TTTCAATCCACCAGCTCTTCAACAAAAAAGCTGCTATTACATATTGTCATTTATGAAGGA
AGCTGGAGAGTCTTGGCTTTAGCTGTGATAGGTTTGCCCACCTGAATGCTGTGACACCCA
TTGCCCAGGTATCTTGAAAGCAAATTGCTCTCCCACCACTTCTCTTCCCTCTGCCCATCA
TTCCTTTGACAGTGCCAGGGAGGAGTCCCCATTCATCGGTGAGTGGGCACCAGCTCTTTT
GTTTGTGAAGGGGCAGTTTGAGAGTGAAACAGGAGGACATCACTTCCTCCCTCAGCCCCT
GTTTGGATGTGTACACTCTGGCTGAAGGGAGTCCTTTGATTTAGTTTCAAAATAGAGTCT
CTCTCTTGGATTTCCTTCTTGACTCTTTACCTATGGGTCCATTTCCCCCCGCCCCCCATT
GCTTCCCCTTCCAGGCAGCTCTATTCTTACAGAGCCATGGCAGGACATTTAAAAATTCCA
ATGAAAACACTAAAAGGAAAGTGTAGAATCACTAGCGACTAACCACTGGGAACCTATTTT
CTCAATCTTCCTCTATGTTGTGTTCTTTGTATTCTCAAGATGATAATATATTATGTATTT
GAATTGCTGAAAAATTGAAAATGAGGTTTAAGATATATGTATATAAAGCATATGCTGTAT
TGGTGCAATAATGGTAATTAAAAATATGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAA |
|
81-308, - strand, RNAz p=0.994287 |
|
105-220, - strand, RNAz p=0.9119 |
|
498-601, - strand, RNAz p=0.853861 |
|
637-750, - strand, RNAz p=0.778311 |
|
649-768, - strand, RNAz p=0.997665 |
|
949-1402, - strand, RNAz p=0.97339 |
|
964-1078, - strand, RNAz p=0.768155 |
|
1276-1390, - strand, RNAz p=0.862126 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
81-308, - strand, RNAz p=0.994287 |
|
105-220, - strand, RNAz p=0.9119 |
|
498-601, - strand, RNAz p=0.853861 |
|
637-750, - strand, RNAz p=0.778311 |
|
649-768, - strand, RNAz p=0.997665 |
|
949-1402, - strand, RNAz p=0.97339 |
|
964-1078, - strand, RNAz p=0.768155 |
|
1276-1390, - strand, RNAz p=0.862126 |
|
90-199, + strand, RNAmicro p=0.999484 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
90-199, + strand, RNAmicro p=0.999484 |
|
82-260, CH3#019_A06T7 Canine heart normalized cDNA Library in pBluescript
(gb|BU748283.1|), blast E-value=4e-18, identity=84.07% |
|
94-260, CH3#049_H12T7 Canine heart normalized cDNA Library in pBluescript
(gb|CF407688.1|), blast E-value=0.000000000000001, identity=84.12% |
|
82-260, CH3#075_D02MF Canine heart normalized cDNA Library in pBluescript
(gb|CF411704.1|), blast E-value=4e-18, identity=84.07% |
|
265-308, UMC-pd3end3-004-c09 Endometrium gilt D3 of estrous cycle pd3end Sus
(gb|CO988605.1|), blast E-value=0.00000000000002, identity=100% |
|
193-308, 1608564 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY466613.1|),
blast E-value=0.00000000002, identity=85% |
|
193-308, LB01818.CR_G04 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE222928.1|),
blast E-value=0.00000000002, identity=85% |
|
652-766, 1361462 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN533330.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02528.CR_B23 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV875680.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02630.CR_O02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884491.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02816.CR_M11 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910186.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02824.CR_O14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912689.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02554.CR_O19 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE346489.1|),
blast E-value=5e-19, identity=86.09% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
82-260, CH3#019_A06T7 Canine heart normalized cDNA Library in pBluescript
(gb|BU748283.1|), blast E-value=4e-18, identity=84.07% |
|
94-260, CH3#049_H12T7 Canine heart normalized cDNA Library in pBluescript
(gb|CF407688.1|), blast E-value=0.000000000000001, identity=84.12% |
|
82-260, CH3#075_D02MF Canine heart normalized cDNA Library in pBluescript
(gb|CF411704.1|), blast E-value=4e-18, identity=84.07% |
|
265-308, UMC-pd3end3-004-c09 Endometrium gilt D3 of estrous cycle pd3end Sus
(gb|CO988605.1|), blast E-value=0.00000000000002, identity=100% |
|
193-308, 1608564 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY466613.1|),
blast E-value=0.00000000002, identity=85% |
|
193-308, LB01818.CR_G04 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE222928.1|),
blast E-value=0.00000000002, identity=85% |
|
652-766, 1361462 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN533330.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02528.CR_B23 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV875680.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02630.CR_O02 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV884491.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02816.CR_M11 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910186.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02824.CR_O14 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912689.1|),
blast E-value=5e-19, identity=86.09% |
|
652-766, LB02554.CR_O19 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE346489.1|),
blast E-value=5e-19, identity=86.09% |
|
2-1596, gnl|bosTau2|chr1 (31823519-31821924) |
|
2-1596, gnl|canFam2|chr27 (40499101-40500356) |
|
2-1596, gnl|dasNov1|scaffold_11301 (22897-21671) |
|
2-1596, gnl|echTel1|scaffold_271729 (10038-11286) |
|
2-1596, gnl|hg17|chr12 (8139849-8141102) |
|
2-1596, gnl|Hg17|chr12 (8140038-8141630) |
|
2-1596, gnl|loxAfr1|scaffold_23852 (4127-5361) |
|
2-1596, gnl|mm7|chr6 (122924269-122925422) |
|
2-1596, gnl|Mm7|chr6 (122924451-122925922) |
|
2-1596, gnl|monDom2|scaffold_31 (11418010-11416598) |
|
2-1596, gnl|oryCun1|scaffold_214723 (4289-3077) |
|
2-1596, gnl|panTro1|chr10 (8679729-8680979) |
|
2-1596, gnl|rheMac2|chr11 (8472426-8473674) |
|
2-1596, gnl|rn3|chr4 (159612862-159614037) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-1596, gnl|bosTau2|chr1 (31823519-31821924) |
|
2-1596, gnl|canFam2|chr27 (40499101-40500356) |
|
2-1596, gnl|dasNov1|scaffold_11301 (22897-21671) |
|
2-1596, gnl|echTel1|scaffold_271729 (10038-11286) |
|
2-1596, gnl|hg17|chr12 (8139849-8141102) |
|
2-1596, gnl|Hg17|chr12 (8140038-8141630) |
|
2-1596, gnl|loxAfr1|scaffold_23852 (4127-5361) |
|
2-1596, gnl|mm7|chr6 (122924269-122925422) |
|
2-1596, gnl|Mm7|chr6 (122924451-122925922) |
|
2-1596, gnl|monDom2|scaffold_31 (11418010-11416598) |
|
2-1596, gnl|oryCun1|scaffold_214723 (4289-3077) |
|
2-1596, gnl|panTro1|chr10 (8679729-8680979) |
|
2-1596, gnl|rheMac2|chr11 (8472426-8473674) |
|
2-1596, gnl|rn3|chr4 (159612862-159614037) |
|
amn (0.417711) |
|
fhi (0.339155) |
|
cga (0.279096) |
|
fce (0.271592) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
bfe (0.149858) |
|
spl (0.143184) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
amn (0.417711) |
|
fhi (0.339155) |
|
cga (0.279096) |
|
fce (0.271592) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
bfe (0.149858) |
|
spl (0.143184) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
