Non-Coding RNA Search

Ss1.1-mE7-MI-P-E7-agz-g-02-1-UM.s1.3

Sequence:


               
               TTTTTTTTTTTTTTTTCTGTTTTTTAGCCTATTACTTTTTTAAGAATTTGGACCAAGCTG
TTAGGCTCCAAAAAATGAGTGGAGCGGTAATGATGTGAGTGATGTTGTATCAATTCAGAA
TCCTTGTGTACAGATAATCATCATATTGCAAAGTTGAAGGAATCAAAAGGAGCCACATTT
AAATAGGTCTAATTTGACTGTCAGAATGTGCTATGTTAGGACCTTGTGGCCAACTCAGAC
ATGAATGTTCTATCAATTCTATCAATAAAGACTTCAGCTTCCAGGAACTTTTATCCACAT
ACTTCCTAAATGAGCTGTACAGGCAGTTCCCAGTTCATCTACCCCAGTTCCAAGCCAGTG
ACTACTTGGGACCAGTTTCTGTGGCTAGCTGGCCCAAAGACCACAGGAACTCCTCTTTCT
TCCTAAGTGTTGCTTAGAATAGCTCATTCTTGGAGTTCCCATTGTCGTGCAGTGGGTTAA
GAATCTGACGGCAACACCTTGGGTGCTCAGGTACAGGTTCAGTCCCCATCCCAGTGCAGT
GGGTTAAAGGATCTGGTGTTGCCACACCTGCAACATAGGTTGTAGCTGCAGTGCAGATTC
AGTCCCTGGCCTGGTAACTTCCGTATGCCCTGCATGCAGCTGTTCAAGAAAAAAAGCTAG
CCCATTCTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTCTGTTTTTTAGCCTATTACTTTTTTAAGAATTTGGACCAAGCTG
TTAGGCTCCAAAAAATGAGTGGAGCGGTAATGATGTGAGTGATGTTGTATCAATTCAGAA
TCCTTGTGTACAGATAATCATCATATTGCAAAGTTGAAGGAATCAAAAGGAGCCACATTT
AAATAGGTCTAATTTGACTGTCAGAATGTGCTATGTTAGGACCTTGTGGCCAACTCAGAC
ATGAATGTTCTATCAATTCTATCAATAAAGACTTCAGCTTCCAGGAACTTTTATCCACAT
ACTTCCTAAATGAGCTGTACAGGCAGTTCCCAGTTCATCTACCCCAGTTCCAAGCCAGTG
ACTACTTGGGACCAGTTTCTGTGGCTAGCTGGCCCAAAGACCACAGGAACTCCTCTTTCT
TCCTAAGTGTTGCTTAGAATAGCTCATTCTTGGAGTTCCCATTGTCGTGCAGTGGGTTAA
GAATCTGACGGCAACACCTTGGGTGCTCAGGTACAGGTTCAGTCCCCATCCCAGTGCAGT
GGGTTAAAGGATCTGGTGTTGCCACACCTGCAACATAGGTTGTAGCTGCAGTGCAGATTC
AGTCCCTGGCCTGGTAACTTCCGTATGCCCTGCATGCAGCTGTTCAAGAAAAAAAGCTAG
CCCATTCTCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               336-450, - strand, RNAz p=0.998238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-450, - strand, RNAz p=0.998238

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-450, gnl|bosTau2|chr28 (2149218-2148787)
               

               
               11-450, gnl|Hg17|chr1 (231832175-231832579)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-450, gnl|bosTau2|chr28 (2149218-2148787)
               

               
               11-450, gnl|Hg17|chr1 (231832175-231832579)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pty (0.142714)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	11-450, gnl\|bosTau2\|chr28 (2149218-2148787)
	11-450, gnl\|Hg17\|chr1 (231832175-231832579)